@ARTICLE{TreeBASE2Ref25624,
author = {Joseph W. Spatafora and Ying Chang and Gerald L. Benny and Katy Lazarus and Matthew E Smith and Mary L. Berbee and Gregory Bonito and Nicolas Corradi and Igor V Grigoriev and Andrii P. Gryganskyi and Timothy Y. James and Kerry O'Donnell and Thomas N Taylor and Jessie Karen Uehling and Rytas Vilgalys and Merlin M. White and Jason E Stajich},
title = {A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data},
year = {2016},
keywords = {fungi, zygomycete, Zoopagomycota, Mucoromycota, Mortierellomycotina, Glomeromycotina, Mucoromycotina, Entomophtoromycotina, Kickxellomycotina, Zoopagomycotina},
doi = {10.3852/16-042},
url = {http://www.mycologia.org/content/108/5/1028.short},
pmid = {27738200},
journal = {Mycologia},
volume = {108},
number = {5},
pages = {1028--1046},
abstract = {Zygomycete fungi were classified as a single phylum, Zygomycota, based on sexual reproduction by zygospores, frequent asexual reproduction by sporangia, absence of multicellular sporocarps, and production of coenocytic hyphae, all with some exceptions. Molecular phylogenies based on one or a few genes did not support the monophyly of the phylum, however, and the phylum was subsequently abandoned. Here we present phylogenetic analyses of a genome-scale data set for 46 taxa, including 25 zygomycetes and 192 proteins, and we demonstrate that zygomycetes comprise two major clades that form a paraphyletic grade. A formal phylogenetic classification is proposed herein and includes two phyla, six subphyla, four classes and 16 orders. On the basis of these results, the phyla Mucoromycota and Zoopagomycota are circumscribed. Zoopagomycota comprises Entomophtoromycotina, Kickxellomycotina and Zoopagomycotina; it constitutes the earliest diverging lineage of zygomycetes and contains species that are primarily parasites and pathogens of small animals (e.g. amoeba, insects, etc.) and other fungi, i.e. mycoparasites. Mucoromycota comprises Glomeromycotina, Mortierellomycotina, and Mucoromycotina and is sister to Dikarya. It is the more derived clade of zygomycetes and mainly consists of mycorrhizal fungi, root endophytes, and decomposers of plant material. Evolution of trophic modes, morphology, and analysis of genome-scale data are discussed.}
}
Citation for Study 18957
Citation title:
"A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data".
Study name:
"A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data".
This study is part of submission 18957
(Status: Published).
Citation
Spatafora J.W., Chang Y., Benny G., Lazarus K., Smith M.E., Berbee M.L., Bonito G., Corradi N., Grigoriev I.V., Gryganskyi A.P., James T.Y., O'donnell K., Taylor T.N., Uehling J.K., Vilgalys R., White M.M., & Stajich J.E. 2016. A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data. Mycologia, 108(5): 1028-1046.
Authors
-
Spatafora J.W.
-
Chang Y.
-
Benny G.
-
Lazarus K.
-
Smith M.E.
-
Berbee M.L.
-
Bonito G.
-
Corradi N.
-
Grigoriev I.V.
-
Gryganskyi A.P.
919 667 8734
-
James T.Y.
-
O'donnell K.
309-681-6383
-
Taylor T.N.
-
Uehling J.K.
-
Vilgalys R.
-
White M.M.
-
Stajich J.E.
(submitter)
951-827-2363
Abstract
Zygomycete fungi were classified as a single phylum, Zygomycota, based on sexual reproduction by zygospores, frequent asexual reproduction by sporangia, absence of multicellular sporocarps, and production of coenocytic hyphae, all with some exceptions. Molecular phylogenies based on one or a few genes did not support the monophyly of the phylum, however, and the phylum was subsequently abandoned. Here we present phylogenetic analyses of a genome-scale data set for 46 taxa, including 25 zygomycetes and 192 proteins, and we demonstrate that zygomycetes comprise two major clades that form a paraphyletic grade. A formal phylogenetic classification is proposed herein and includes two phyla, six subphyla, four classes and 16 orders. On the basis of these results, the phyla Mucoromycota and Zoopagomycota are circumscribed. Zoopagomycota comprises Entomophtoromycotina, Kickxellomycotina and Zoopagomycotina; it constitutes the earliest diverging lineage of zygomycetes and contains species that are primarily parasites and pathogens of small animals (e.g. amoeba, insects, etc.) and other fungi, i.e. mycoparasites. Mucoromycota comprises Glomeromycotina, Mortierellomycotina, and Mucoromycotina and is sister to Dikarya. It is the more derived clade of zygomycetes and mainly consists of mycorrhizal fungi, root endophytes, and decomposers of plant material. Evolution of trophic modes, morphology, and analysis of genome-scale data are discussed.
Keywords
fungi, zygomycete, Zoopagomycota, Mucoromycota, Mortierellomycotina, Glomeromycotina, Mucoromycotina, Entomophtoromycotina, Kickxellomycotina, Zoopagomycotina
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S18957
- Other versions:
Nexus
NeXML
- Show BibTeX reference
@ARTICLE{TreeBASE2Ref25624,
author = {Joseph W. Spatafora and Ying Chang and Gerald L. Benny and Katy Lazarus and Matthew E Smith and Mary L. Berbee and Gregory Bonito and Nicolas Corradi and Igor V Grigoriev and Andrii P. Gryganskyi and Timothy Y. James and Kerry O'Donnell and Thomas N Taylor and Jessie Karen Uehling and Rytas Vilgalys and Merlin M. White and Jason E Stajich},
title = {A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data},
year = {2016},
keywords = {fungi, zygomycete, Zoopagomycota, Mucoromycota, Mortierellomycotina, Glomeromycotina, Mucoromycotina, Entomophtoromycotina, Kickxellomycotina, Zoopagomycotina},
doi = {10.3852/16-042},
url = {http://www.mycologia.org/content/108/5/1028.short},
pmid = {27738200},
journal = {Mycologia},
volume = {108},
number = {5},
pages = {1028--1046},
abstract = {Zygomycete fungi were classified as a single phylum, Zygomycota, based on sexual reproduction by zygospores, frequent asexual reproduction by sporangia, absence of multicellular sporocarps, and production of coenocytic hyphae, all with some exceptions. Molecular phylogenies based on one or a few genes did not support the monophyly of the phylum, however, and the phylum was subsequently abandoned. Here we present phylogenetic analyses of a genome-scale data set for 46 taxa, including 25 zygomycetes and 192 proteins, and we demonstrate that zygomycetes comprise two major clades that form a paraphyletic grade. A formal phylogenetic classification is proposed herein and includes two phyla, six subphyla, four classes and 16 orders. On the basis of these results, the phyla Mucoromycota and Zoopagomycota are circumscribed. Zoopagomycota comprises Entomophtoromycotina, Kickxellomycotina and Zoopagomycotina; it constitutes the earliest diverging lineage of zygomycetes and contains species that are primarily parasites and pathogens of small animals (e.g. amoeba, insects, etc.) and other fungi, i.e. mycoparasites. Mucoromycota comprises Glomeromycotina, Mortierellomycotina, and Mucoromycotina and is sister to Dikarya. It is the more derived clade of zygomycetes and mainly consists of mycorrhizal fungi, root endophytes, and decomposers of plant material. Evolution of trophic modes, morphology, and analysis of genome-scale data are discussed.}
}
- Show RIS reference
TY - JOUR
ID - 25624
AU - Spatafora,Joseph W.
AU - Chang,Ying
AU - Benny,Gerald L.
AU - Lazarus,Katy
AU - Smith,Matthew E
AU - Berbee,Mary L.
AU - Bonito,Gregory
AU - Corradi,Nicolas
AU - Grigoriev,Igor V
AU - Gryganskyi,Andrii P.
AU - James,Timothy Y.
AU - O'Donnell,Kerry
AU - Taylor,Thomas N
AU - Uehling,Jessie Karen
AU - Vilgalys,Rytas
AU - White,Merlin M.
AU - Stajich,Jason E
T1 - A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
PY - 2016
KW - fungi
KW - zygomycete
KW - Zoopagomycota
KW - Mucoromycota
KW - Mortierellomycotina
KW - Glomeromycotina
KW - Mucoromycotina
KW - Entomophtoromycotina
KW - Kickxellomycotina
KW - Zoopagomycotina
UR - http://www.mycologia.org/content/108/5/1028.short
N2 - Zygomycete fungi were classified as a single phylum, Zygomycota, based on sexual reproduction by zygospores, frequent asexual reproduction by sporangia, absence of multicellular sporocarps, and production of coenocytic hyphae, all with some exceptions. Molecular phylogenies based on one or a few genes did not support the monophyly of the phylum, however, and the phylum was subsequently abandoned. Here we present phylogenetic analyses of a genome-scale data set for 46 taxa, including 25 zygomycetes and 192 proteins, and we demonstrate that zygomycetes comprise two major clades that form a paraphyletic grade. A formal phylogenetic classification is proposed herein and includes two phyla, six subphyla, four classes and 16 orders. On the basis of these results, the phyla Mucoromycota and Zoopagomycota are circumscribed. Zoopagomycota comprises Entomophtoromycotina, Kickxellomycotina and Zoopagomycotina; it constitutes the earliest diverging lineage of zygomycetes and contains species that are primarily parasites and pathogens of small animals (e.g. amoeba, insects, etc.) and other fungi, i.e. mycoparasites. Mucoromycota comprises Glomeromycotina, Mortierellomycotina, and Mucoromycotina and is sister to Dikarya. It is the more derived clade of zygomycetes and mainly consists of mycorrhizal fungi, root endophytes, and decomposers of plant material. Evolution of trophic modes, morphology, and analysis of genome-scale data are discussed.
L3 - 10.3852/16-042
JF - Mycologia
VL - 108
IS - 5
SP - 1028
EP - 1046
ER -