@ARTICLE{TreeBASE2Ref15394,
author = {Astrid Farwick and Ursula Jordan and Georg Fuellen and Doroth?e Huchon and Fran?ois Catzeflis and Juergen Brosius and Juergen Schmitz},
title = {Automated Scanning for Phylogenetically Informative Transposed Elements in Rodents.},
year = {2006},
keywords = {},
doi = {10.1080/10635150601064806},
url = {},
pmid = {},
journal = {Systematic Biology},
volume = {55},
number = {6},
pages = {936--948},
abstract = {Transposed elements constitute an attractive, useful source of phylogenetic markers to elucidate the evolutionary history of their hosts. Frequent and successive amplifications over evolutionary time are important requirements for utilizing their presence or absence as landmarks of evolution. Although transposed elements are well distributed in rodent taxa, the generally high degree of genomic sequence divergence among species complicates our access to presence/absence data. With this in mind we developed a novel, high throughput computational strategy, called CPAL (Conserved Presence/Absence Locus finder), to identify genome-wide distributed, phylogenetically informative transposed elements flanked by highly conserved regions. From a total of 232 extracted chromosomal mouse loci we randomly selected 14 of these plus 2 others from previous test screens and attempted to amplify them via PCR in representative rodent species. All loci were amplifiable and ultimately contributed 31 phylogenetically informative markers distributed throughout the major groups of Rodentia.}
}
Citation for Study 1619
Citation title:
"Automated Scanning for Phylogenetically Informative Transposed Elements in Rodents.".
This study was previously identified under the legacy study ID S1568
(Status: Published).
Citation
Farwick A., Jordan U., Fuellen G., Huchon D., Catzeflis F., Brosius J., & Schmitz J. 2006. Automated Scanning for Phylogenetically Informative Transposed Elements in Rodents. Systematic Biology, 55(6): 936-948.
Authors
-
Farwick A.
-
Jordan U.
-
Fuellen G.
-
Huchon D.
-
Catzeflis F.
-
Brosius J.
-
Schmitz J.
Abstract
Transposed elements constitute an attractive, useful source of phylogenetic markers to elucidate the evolutionary history of their hosts. Frequent and successive amplifications over evolutionary time are important requirements for utilizing their presence or absence as landmarks of evolution. Although transposed elements are well distributed in rodent taxa, the generally high degree of genomic sequence divergence among species complicates our access to presence/absence data. With this in mind we developed a novel, high throughput computational strategy, called CPAL (Conserved Presence/Absence Locus finder), to identify genome-wide distributed, phylogenetically informative transposed elements flanked by highly conserved regions. From a total of 232 extracted chromosomal mouse loci we randomly selected 14 of these plus 2 others from previous test screens and attempted to amplify them via PCR in representative rodent species. All loci were amplifiable and ultimately contributed 31 phylogenetically informative markers distributed throughout the major groups of Rodentia.
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S1619
- Other versions:
Nexus
NeXML
- Show BibTeX reference
@ARTICLE{TreeBASE2Ref15394,
author = {Astrid Farwick and Ursula Jordan and Georg Fuellen and Doroth?e Huchon and Fran?ois Catzeflis and Juergen Brosius and Juergen Schmitz},
title = {Automated Scanning for Phylogenetically Informative Transposed Elements in Rodents.},
year = {2006},
keywords = {},
doi = {10.1080/10635150601064806},
url = {},
pmid = {},
journal = {Systematic Biology},
volume = {55},
number = {6},
pages = {936--948},
abstract = {Transposed elements constitute an attractive, useful source of phylogenetic markers to elucidate the evolutionary history of their hosts. Frequent and successive amplifications over evolutionary time are important requirements for utilizing their presence or absence as landmarks of evolution. Although transposed elements are well distributed in rodent taxa, the generally high degree of genomic sequence divergence among species complicates our access to presence/absence data. With this in mind we developed a novel, high throughput computational strategy, called CPAL (Conserved Presence/Absence Locus finder), to identify genome-wide distributed, phylogenetically informative transposed elements flanked by highly conserved regions. From a total of 232 extracted chromosomal mouse loci we randomly selected 14 of these plus 2 others from previous test screens and attempted to amplify them via PCR in representative rodent species. All loci were amplifiable and ultimately contributed 31 phylogenetically informative markers distributed throughout the major groups of Rodentia.}
}
- Show RIS reference
TY - JOUR
ID - 15394
AU - Farwick,Astrid
AU - Jordan,Ursula
AU - Fuellen,Georg
AU - Huchon,Doroth?e
AU - Catzeflis,Fran?ois
AU - Brosius,Juergen
AU - Schmitz,Juergen
T1 - Automated Scanning for Phylogenetically Informative Transposed Elements in Rodents.
PY - 2006
KW -
UR - http://dx.doi.org/10.1080/10635150601064806
N2 - Transposed elements constitute an attractive, useful source of phylogenetic markers to elucidate the evolutionary history of their hosts. Frequent and successive amplifications over evolutionary time are important requirements for utilizing their presence or absence as landmarks of evolution. Although transposed elements are well distributed in rodent taxa, the generally high degree of genomic sequence divergence among species complicates our access to presence/absence data. With this in mind we developed a novel, high throughput computational strategy, called CPAL (Conserved Presence/Absence Locus finder), to identify genome-wide distributed, phylogenetically informative transposed elements flanked by highly conserved regions. From a total of 232 extracted chromosomal mouse loci we randomly selected 14 of these plus 2 others from previous test screens and attempted to amplify them via PCR in representative rodent species. All loci were amplifiable and ultimately contributed 31 phylogenetically informative markers distributed throughout the major groups of Rodentia.
L3 - 10.1080/10635150601064806
JF - Systematic Biology
VL - 55
IS - 6
SP - 936
EP - 948
ER -