@ARTICLE{TreeBASE2Ref20303,
author = {Alfredo Justo and David S. Hibbett},
title = {Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset},
year = {2011},
keywords = {generic concepts; large-scale phylogeny; multi-marker analysis; nomenclature; Polyporaceae; Polyporales; taxonomy; Trametes},
doi = {},
url = {http://www.ingentaconnect.com/content/iapt/tax/2011/00000060/00000006/art00003},
pmid = {},
journal = {Taxon},
volume = {60},
number = {6},
pages = {1567?1583},
abstract = {The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU,
ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group
were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined
five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of
Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima
and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions
of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the
trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the
type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view
of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and
nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural
combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for molecular
data) in Trametes based on morphological characters alone will still be possible. Alternative scenarios to divide the
trametoid clade in five or ten genera were considered but if any of these options were to be adopted morphological distinction
of the segregated genera and the ascription of additional species to any of these genera would be very difficult and in some
cases impossible. The genera Artolenzites, Coriolopsis (as currently typified), Coriolus, Cubamyces, Cyclomycetella, Lenzites,
Poronidulus, Pseudotrametes and Pycnoporus are considered synonyms of Trametes}
}
Citation for Study 11678
Citation title:
"Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset".
Study name:
"Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset".
This study is part of submission 11668
(Status: Published).
Citation
Justo A., & Hibbett D. 2011. Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset. Taxon, 60(6): 1567?1583.
Authors
-
Justo A.
(submitter)
-
Hibbett D.
Abstract
The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU,
ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group
were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined
five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of
Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima
and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions
of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the
trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the
type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view
of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and
nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural
combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for molecular
data) in Trametes based on morphological characters alone will still be possible. Alternative scenarios to divide the
trametoid clade in five or ten genera were considered but if any of these options were to be adopted morphological distinction
of the segregated genera and the ascription of additional species to any of these genera would be very difficult and in some
cases impossible. The genera Artolenzites, Coriolopsis (as currently typified), Coriolus, Cubamyces, Cyclomycetella, Lenzites,
Poronidulus, Pseudotrametes and Pycnoporus are considered synonyms of Trametes
Keywords
generic concepts; large-scale phylogeny; multi-marker analysis; nomenclature; Polyporaceae; Polyporales; taxonomy; Trametes
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S11678
- Other versions:
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- Show BibTeX reference
@ARTICLE{TreeBASE2Ref20303,
author = {Alfredo Justo and David S. Hibbett},
title = {Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset},
year = {2011},
keywords = {generic concepts; large-scale phylogeny; multi-marker analysis; nomenclature; Polyporaceae; Polyporales; taxonomy; Trametes},
doi = {},
url = {http://www.ingentaconnect.com/content/iapt/tax/2011/00000060/00000006/art00003},
pmid = {},
journal = {Taxon},
volume = {60},
number = {6},
pages = {1567?1583},
abstract = {The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU,
ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group
were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined
five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of
Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima
and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions
of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the
trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the
type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view
of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and
nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural
combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for molecular
data) in Trametes based on morphological characters alone will still be possible. Alternative scenarios to divide the
trametoid clade in five or ten genera were considered but if any of these options were to be adopted morphological distinction
of the segregated genera and the ascription of additional species to any of these genera would be very difficult and in some
cases impossible. The genera Artolenzites, Coriolopsis (as currently typified), Coriolus, Cubamyces, Cyclomycetella, Lenzites,
Poronidulus, Pseudotrametes and Pycnoporus are considered synonyms of Trametes}
}
- Show RIS reference
TY - JOUR
ID - 20303
AU - Justo,Alfredo
AU - Hibbett,David S.
T1 - Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset
PY - 2011
KW - generic concepts; large-scale phylogeny; multi-marker analysis; nomenclature; Polyporaceae; Polyporales; taxonomy; Trametes
UR - http://www.ingentaconnect.com/content/iapt/tax/2011/00000060/00000006/art00003
N2 - The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU,
ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group
were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined
five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of
Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima
and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions
of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the
trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the
type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view
of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and
nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural
combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for molecular
data) in Trametes based on morphological characters alone will still be possible. Alternative scenarios to divide the
trametoid clade in five or ten genera were considered but if any of these options were to be adopted morphological distinction
of the segregated genera and the ascription of additional species to any of these genera would be very difficult and in some
cases impossible. The genera Artolenzites, Coriolopsis (as currently typified), Coriolus, Cubamyces, Cyclomycetella, Lenzites,
Poronidulus, Pseudotrametes and Pycnoporus are considered synonyms of Trametes
L3 -
JF - Taxon
VL - 60
IS - 6
ER -