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Citation for Study 11000

Citation title: "Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta and Pleurophoma".

Study name: "Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta and Pleurophoma".

This study is part of submission 10990 (Status: Published).

Citation

De gruyter J., Woudenberg J., Aveskamp M., Verkley G., Groenewald J.Z., & Crous P.W. 2010. Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta and Pleurophoma. Mycologia, 102(5): 1066-1081.

Authors

• De gruyter J.
• Woudenberg J.
• Aveskamp M.
• Verkley G.
• Groenewald J.Z. +31302122600
• Crous P.W.

Abstract

Sequence data from the 18S nrDNA (SSU) and 28S nrDNA (LSU) regions of isolates of Phoma section Paraphoma were compared with those of representative isolates of the morphologically similar anamorph genera Pleurophoma and Pyrenochaeta and of the type species of Phoma sections Phoma, Pilosa and Plenodomus. Phoma section Paraphoma was found to be highly polyphyletic within the Pleosporales and only distantly related to Phoma section Phoma. The genus Paraphoma, which is based on Paraphoma radicina, is reintroduced in the Phaeosphaeriaceae with two additional taxa. The new genera Setophoma and Neosetophoma, type species Setophoma terrestris comb. nov. and Neosetophoma samarorum comb. nov., are introduced and represent species that are closely related to Paraphoma but differ based on morphological characters and molecular phylogeny. Phoma coonsii is transferred to genus Chaetosphaeronema that also belongs to the Phaeosphaeriaceae. Pyrenochaetopsis gen. nov. is introduced to accommodate the type species Pyrenochaetopsis leptospora comb. nov., as well as several other species formerly accommodated in Phoma and Pyrenochaeta. Pyrenochaetopsis is closely related to Pyrenochaeta and classified in the Cucurbitariaceae. Pleurophoma cava is transferred to genus Pyrenochaeta. The new genera elucidate the confusing taxonomy of species in genera Phoma, Pyrenochaeta and Pleurophoma and recognize monophyletic genera with distinct teleomorph affinities.

Keywords

coelomycetes, 18S nrDNA, molecular phylogeny, Pleosporales, Pyrenochaetopsis gen. nov, Setophoma gen. nov, 28S nrDNA, Neosetophoma gen. nov.

External links

• DOI: 10.3852/09-240
• PMID: 20943506
• Other URL: http://www.mycologia.org/cgi/reprint/102/5/1066?maxtoshow=&hits=10&RESULTFORMAT=&searchid=1&FIRSTINDEX=0&resourcetype=HWCIT

About this resource

• Canonical resource URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11000
• Other versions: Nexus NeXML
• Show BibTeX reference

  		@ARTICLE{TreeBASE2Ref19313,
  	 author = {Johannes  de Gruyter and Joyce H. C.  Woudenberg and Maikel M.  Aveskamp and Gerard J.M.  Verkley and  Johannes (Ewald) Zacharias Groenewald and Pedro W. Crous},
  	 title = {Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta and Pleurophoma},
  	 year = {2010},
  	 keywords = {coelomycetes, 18S nrDNA, molecular phylogeny, Pleosporales, Pyrenochaetopsis gen. nov, Setophoma gen. nov, 28S nrDNA, Neosetophoma gen. nov.},
  	 doi = {10.3852/09-240},
  	 url = {http://www.mycologia.org/cgi/reprint/102/5/1066?maxtoshow=&hits=10&RESULTFORMAT=&searchid=1&FIRSTINDEX=0&resourcetype=HWCIT},
  	 pmid = {20943506},
  	 journal = {Mycologia},
  	 volume = {102},
  	 number = {5},
  	 pages = {1066--1081},
  	 abstract = {Sequence data from the 18S nrDNA (SSU) and 28S nrDNA (LSU) regions of isolates of Phoma section Paraphoma were compared with those of representative isolates of the morphologically similar anamorph genera Pleurophoma and Pyrenochaeta and of the type species of Phoma sections Phoma, Pilosa and Plenodomus. Phoma section Paraphoma was found to be highly polyphyletic within the Pleosporales and only distantly related to Phoma section Phoma. The genus Paraphoma, which is based on Paraphoma radicina, is reintroduced in the Phaeosphaeriaceae with two additional taxa. The new genera Setophoma and Neosetophoma, type species Setophoma terrestris comb. nov. and Neosetophoma samarorum comb. nov., are introduced and represent species that are closely related to Paraphoma but differ based on morphological characters and molecular phylogeny. Phoma coonsii is transferred to genus Chaetosphaeronema that also belongs to the Phaeosphaeriaceae. Pyrenochaetopsis gen. nov. is introduced to accommodate the type species Pyrenochaetopsis leptospora comb. nov., as well as several other species formerly accommodated in Phoma and Pyrenochaeta. Pyrenochaetopsis is closely related to Pyrenochaeta and classified in the Cucurbitariaceae. Pleurophoma cava is transferred to genus Pyrenochaeta. The new genera elucidate the confusing taxonomy of species in genera Phoma, Pyrenochaeta and Pleurophoma and recognize monophyletic genera
  with distinct teleomorph affinities. }
  }
  		

• Show RIS reference

  		TY  - JOUR
  ID  - 19313
  AU  - de Gruyter,Johannes 
  AU  - Woudenberg,Joyce H. C. 
  AU  - Aveskamp,Maikel M. 
  AU  - Verkley,Gerard J.M. 
  AU  - Groenewald, Johannes (Ewald) Zacharias
  AU  - Crous,Pedro W.
  T1  - Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta and Pleurophoma
  PY  - 2010
  KW  - coelomycetes
  KW  - 18S nrDNA
  KW  - molecular phylogeny
  KW  - Pleosporales
  KW  - Pyrenochaetopsis gen. nov
  KW  - Setophoma gen. nov
  KW  - 28S nrDNA
  KW  - Neosetophoma gen. nov.
  UR  - http://www.mycologia.org/cgi/reprint/102/5/1066?maxtoshow=&hits=10&RESULTFORMAT=&searchid=1&FIRSTINDEX=0&resourcetype=HWCIT
  N2  - Sequence data from the 18S nrDNA (SSU) and 28S nrDNA (LSU) regions of isolates of Phoma section Paraphoma were compared with those of representative isolates of the morphologically similar anamorph genera Pleurophoma and Pyrenochaeta and of the type species of Phoma sections Phoma, Pilosa and Plenodomus. Phoma section Paraphoma was found to be highly polyphyletic within the Pleosporales and only distantly related to Phoma section Phoma. The genus Paraphoma, which is based on Paraphoma radicina, is reintroduced in the Phaeosphaeriaceae with two additional taxa. The new genera Setophoma and Neosetophoma, type species Setophoma terrestris comb. nov. and Neosetophoma samarorum comb. nov., are introduced and represent species that are closely related to Paraphoma but differ based on morphological characters and molecular phylogeny. Phoma coonsii is transferred to genus Chaetosphaeronema that also belongs to the Phaeosphaeriaceae. Pyrenochaetopsis gen. nov. is introduced to accommodate the type species Pyrenochaetopsis leptospora comb. nov., as well as several other species formerly accommodated in Phoma and Pyrenochaeta. Pyrenochaetopsis is closely related to Pyrenochaeta and classified in the Cucurbitariaceae. Pleurophoma cava is transferred to genus Pyrenochaeta. The new genera elucidate the confusing taxonomy of species in genera Phoma, Pyrenochaeta and Pleurophoma and recognize monophyletic genera
  with distinct teleomorph affinities. 
  L3  - 10.3852/09-240
  JF  - Mycologia
  VL  - 102
  IS  - 5
  SP  - 1066
  EP  - 1081
  ER  -