@ARTICLE{TreeBASE2Ref18673,
author = {Taylor L Weiss and J S Johnston and Kazuhiro Fujisawa and Koremitsu Sumimoto and Shigeru Okada and Joe Chappell and Tim P Devarenne},
title = {Phylogenetic Placement, Genome Size, and GC-Content of the Liquid Hydrocarbon Producing Green Microalga Botryococcus Braunii var. Berkeley (Showa) (Chlorophyta)},
year = {2010},
keywords = {},
doi = {10.1111/j.1529-8817.2010.00820.x},
url = {},
pmid = {},
journal = {Journal of Phycology},
volume = {46},
number = {3},
pages = {534--540},
abstract = {We report the genome size, the GC content and perform a phylogenetic analysis on Botryococcus braunii, K?tzing, a green, colony forming, hydrocarbon-rich alga that is an attractive source for biopetroleum. While the chemistry of the hydrocarbons produced by the B race of B. braunii has been studied for many years, there is a deficiency of information concerning the molecular biology of this alga. Additionally, there has been some discrepancy as to the phylogenetic placement of the Berkeley (or Showa) strain of the B race. In order to clarify its classification, we isolated the Berkeley strain nuclear small subunit (18S) rRNA gene and beta-actin cDNA and used these sequences for phylogenetic analysis to determine that the Berkeley strain belongs to the Trebouxiophyceae class. This is in agreement with other B races of B. braunii, indicating the Berkeley strain is a true B race of B. braunii. In order to better understand molecular aspects of B. braunii, we obtained the Berkeley strain genome size as a first step in genome sequencing. Using flow cytometry, we determined the B. braunii, Berkeley genome size to be 166.2 +/- 2.2 Mb. We also estimated the GC-content of the Berkeley strain as 54.4 +/- 1.2% for expressed gene sequences.}
}
Citation for Study 10182
Citation title:
"Phylogenetic Placement, Genome Size, and GC-Content of the Liquid Hydrocarbon Producing Green Microalga Botryococcus Braunii var. Berkeley (Showa) (Chlorophyta)".
This study was previously identified under the legacy study ID S2526
(Status: Published).
Citation
Weiss T., Johnston J., Fujisawa K., Sumimoto K., Okada S., Chappell J., & Devarenne T. 2010. Phylogenetic Placement, Genome Size, and GC-Content of the Liquid Hydrocarbon Producing Green Microalga Botryococcus Braunii var. Berkeley (Showa) (Chlorophyta). Journal of Phycology, 46(3): 534-540.
Authors
-
Weiss T.
-
Johnston J.
-
Fujisawa K.
-
Sumimoto K.
-
Okada S.
-
Chappell J.
-
Devarenne T.
Abstract
We report the genome size, the GC content and perform a phylogenetic analysis on Botryococcus braunii, K?tzing, a green, colony forming, hydrocarbon-rich alga that is an attractive source for biopetroleum. While the chemistry of the hydrocarbons produced by the B race of B. braunii has been studied for many years, there is a deficiency of information concerning the molecular biology of this alga. Additionally, there has been some discrepancy as to the phylogenetic placement of the Berkeley (or Showa) strain of the B race. In order to clarify its classification, we isolated the Berkeley strain nuclear small subunit (18S) rRNA gene and beta-actin cDNA and used these sequences for phylogenetic analysis to determine that the Berkeley strain belongs to the Trebouxiophyceae class. This is in agreement with other B races of B. braunii, indicating the Berkeley strain is a true B race of B. braunii. In order to better understand molecular aspects of B. braunii, we obtained the Berkeley strain genome size as a first step in genome sequencing. Using flow cytometry, we determined the B. braunii, Berkeley genome size to be 166.2 +/- 2.2 Mb. We also estimated the GC-content of the Berkeley strain as 54.4 +/- 1.2% for expressed gene sequences.
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S10182
- Other versions:
Nexus
NeXML
- Show BibTeX reference
@ARTICLE{TreeBASE2Ref18673,
author = {Taylor L Weiss and J S Johnston and Kazuhiro Fujisawa and Koremitsu Sumimoto and Shigeru Okada and Joe Chappell and Tim P Devarenne},
title = {Phylogenetic Placement, Genome Size, and GC-Content of the Liquid Hydrocarbon Producing Green Microalga Botryococcus Braunii var. Berkeley (Showa) (Chlorophyta)},
year = {2010},
keywords = {},
doi = {10.1111/j.1529-8817.2010.00820.x},
url = {},
pmid = {},
journal = {Journal of Phycology},
volume = {46},
number = {3},
pages = {534--540},
abstract = {We report the genome size, the GC content and perform a phylogenetic analysis on Botryococcus braunii, K?tzing, a green, colony forming, hydrocarbon-rich alga that is an attractive source for biopetroleum. While the chemistry of the hydrocarbons produced by the B race of B. braunii has been studied for many years, there is a deficiency of information concerning the molecular biology of this alga. Additionally, there has been some discrepancy as to the phylogenetic placement of the Berkeley (or Showa) strain of the B race. In order to clarify its classification, we isolated the Berkeley strain nuclear small subunit (18S) rRNA gene and beta-actin cDNA and used these sequences for phylogenetic analysis to determine that the Berkeley strain belongs to the Trebouxiophyceae class. This is in agreement with other B races of B. braunii, indicating the Berkeley strain is a true B race of B. braunii. In order to better understand molecular aspects of B. braunii, we obtained the Berkeley strain genome size as a first step in genome sequencing. Using flow cytometry, we determined the B. braunii, Berkeley genome size to be 166.2 +/- 2.2 Mb. We also estimated the GC-content of the Berkeley strain as 54.4 +/- 1.2% for expressed gene sequences.}
}
- Show RIS reference
TY - JOUR
ID - 18673
AU - Weiss,Taylor L
AU - Johnston,J S
AU - Fujisawa,Kazuhiro
AU - Sumimoto,Koremitsu
AU - Okada,Shigeru
AU - Chappell,Joe
AU - Devarenne,Tim P
T1 - Phylogenetic Placement, Genome Size, and GC-Content of the Liquid Hydrocarbon Producing Green Microalga Botryococcus Braunii var. Berkeley (Showa) (Chlorophyta)
PY - 2010
KW -
UR - http://dx.doi.org/10.1111/j.1529-8817.2010.00820.x
N2 - We report the genome size, the GC content and perform a phylogenetic analysis on Botryococcus braunii, K?tzing, a green, colony forming, hydrocarbon-rich alga that is an attractive source for biopetroleum. While the chemistry of the hydrocarbons produced by the B race of B. braunii has been studied for many years, there is a deficiency of information concerning the molecular biology of this alga. Additionally, there has been some discrepancy as to the phylogenetic placement of the Berkeley (or Showa) strain of the B race. In order to clarify its classification, we isolated the Berkeley strain nuclear small subunit (18S) rRNA gene and beta-actin cDNA and used these sequences for phylogenetic analysis to determine that the Berkeley strain belongs to the Trebouxiophyceae class. This is in agreement with other B races of B. braunii, indicating the Berkeley strain is a true B race of B. braunii. In order to better understand molecular aspects of B. braunii, we obtained the Berkeley strain genome size as a first step in genome sequencing. Using flow cytometry, we determined the B. braunii, Berkeley genome size to be 166.2 +/- 2.2 Mb. We also estimated the GC-content of the Berkeley strain as 54.4 +/- 1.2% for expressed gene sequences.
L3 - 10.1111/j.1529-8817.2010.00820.x
JF - Journal of Phycology
VL - 46
IS - 3
SP - 534
EP - 540
ER -