@ARTICLE{TreeBASE2Ref21461,
author = {Fernanda Antunes Carvalho and Susanne Renner},
title = {A dated phylogeny of the papaya family (Caricaceae) reveals the crop?s closest relatives and the family?s biogeographic history},
year = {2012},
keywords = {Long distance dispersal, Molecular clocks, Historical biogeography, Panamanian Isthmus},
doi = { 10.1016/j.ympev.2012.05.019},
url = { http://dx.doi.org/10.1016/j.ympev.2012.05.019},
pmid = {22659516},
journal = {Molecular Phylogenetics and Evolution},
volume = {65},
number = {},
pages = {46--53},
abstract = {Papaya (Carica papaya) is a crop of great economic importance, and the species was among the first plants
to have its genome sequenced. However, there has never been a complete species-level phylogeny for the
Caricaceae, and the crop?s closest relatives are therefore unknown. We investigated the evolution of the
Caricaceae based on sequences from all species and genera, the monospecificCarica, African Cylicomorpha
with two species, South AmericanJacaratia andVasconcelleawith together c. 28 species, and Mexican/
GuatemalanJarilla andHorovitziawith four species. Most Caricaceae are trees or shrubs; the species of
Jarilla, however, are herbaceous. We generated a matrix of 4711 nuclear and plastid DNA characters
and used maximum likelihood (ML) and Bayesian analysis to infer species relationships, rooting trees
on the Moringaceae. Divergence times were estimated under relaxed and strict molecular clocks, using
different subsets of the data. Ancestral area reconstruction relied on a ML approach. The deepest split
in the Caricaceae occurred during the Late Eocene, when the ancestor of the Neotropical clade arrived
from Africa. In South America, major diversification events coincide with the Miocene northern Andean
uplift and the initial phase of the tectonic collision between South America and Panama resulting in the
Panamanian land bridge.Carica papayais sister to Jarilla/Horovitzia, and all three diverged from South
American Caricaceae in the Oligocene, 27 (22?33) Ma ago, coincident with the early stages of the forma-tion of the Panamanian Isthmus. The discovery thatC. papayais closest to a clade of herbaceous or thin-stemmed species has implications for plant breeders who have so far tried to cross papaya only with
woody highland papayas (Vasconcellea)}
}
Citation for Study 13536
Citation title:
"A dated phylogeny of the papaya family (Caricaceae) reveals the crop?s closest relatives and the family?s biogeographic history".
Study name:
"A dated phylogeny of the papaya family (Caricaceae) reveals the crop?s closest relatives and the family?s biogeographic history".
This study is part of submission 13536
(Status: Published).
Citation
Antunes carvalho F., & Renner S. 2012. A dated phylogeny of the papaya family (Caricaceae) reveals the crop?s closest relatives and the family?s biogeographic history. Molecular Phylogenetics and Evolution, 65: 46-53.
Authors
-
Antunes carvalho F.
(submitter)
-
Renner S.
Abstract
Papaya (Carica papaya) is a crop of great economic importance, and the species was among the first plants
to have its genome sequenced. However, there has never been a complete species-level phylogeny for the
Caricaceae, and the crop?s closest relatives are therefore unknown. We investigated the evolution of the
Caricaceae based on sequences from all species and genera, the monospecificCarica, African Cylicomorpha
with two species, South AmericanJacaratia andVasconcelleawith together c. 28 species, and Mexican/
GuatemalanJarilla andHorovitziawith four species. Most Caricaceae are trees or shrubs; the species of
Jarilla, however, are herbaceous. We generated a matrix of 4711 nuclear and plastid DNA characters
and used maximum likelihood (ML) and Bayesian analysis to infer species relationships, rooting trees
on the Moringaceae. Divergence times were estimated under relaxed and strict molecular clocks, using
different subsets of the data. Ancestral area reconstruction relied on a ML approach. The deepest split
in the Caricaceae occurred during the Late Eocene, when the ancestor of the Neotropical clade arrived
from Africa. In South America, major diversification events coincide with the Miocene northern Andean
uplift and the initial phase of the tectonic collision between South America and Panama resulting in the
Panamanian land bridge.Carica papayais sister to Jarilla/Horovitzia, and all three diverged from South
American Caricaceae in the Oligocene, 27 (22?33) Ma ago, coincident with the early stages of the forma-tion of the Panamanian Isthmus. The discovery thatC. papayais closest to a clade of herbaceous or thin-stemmed species has implications for plant breeders who have so far tried to cross papaya only with
woody highland papayas (Vasconcellea)
Keywords
Long distance dispersal, Molecular clocks, Historical biogeography, Panamanian Isthmus
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S13536
- Other versions:
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NeXML
- Show BibTeX reference
@ARTICLE{TreeBASE2Ref21461,
author = {Fernanda Antunes Carvalho and Susanne Renner},
title = {A dated phylogeny of the papaya family (Caricaceae) reveals the crop?s closest relatives and the family?s biogeographic history},
year = {2012},
keywords = {Long distance dispersal, Molecular clocks, Historical biogeography, Panamanian Isthmus},
doi = { 10.1016/j.ympev.2012.05.019},
url = { http://dx.doi.org/10.1016/j.ympev.2012.05.019},
pmid = {22659516},
journal = {Molecular Phylogenetics and Evolution},
volume = {65},
number = {},
pages = {46--53},
abstract = {Papaya (Carica papaya) is a crop of great economic importance, and the species was among the first plants
to have its genome sequenced. However, there has never been a complete species-level phylogeny for the
Caricaceae, and the crop?s closest relatives are therefore unknown. We investigated the evolution of the
Caricaceae based on sequences from all species and genera, the monospecificCarica, African Cylicomorpha
with two species, South AmericanJacaratia andVasconcelleawith together c. 28 species, and Mexican/
GuatemalanJarilla andHorovitziawith four species. Most Caricaceae are trees or shrubs; the species of
Jarilla, however, are herbaceous. We generated a matrix of 4711 nuclear and plastid DNA characters
and used maximum likelihood (ML) and Bayesian analysis to infer species relationships, rooting trees
on the Moringaceae. Divergence times were estimated under relaxed and strict molecular clocks, using
different subsets of the data. Ancestral area reconstruction relied on a ML approach. The deepest split
in the Caricaceae occurred during the Late Eocene, when the ancestor of the Neotropical clade arrived
from Africa. In South America, major diversification events coincide with the Miocene northern Andean
uplift and the initial phase of the tectonic collision between South America and Panama resulting in the
Panamanian land bridge.Carica papayais sister to Jarilla/Horovitzia, and all three diverged from South
American Caricaceae in the Oligocene, 27 (22?33) Ma ago, coincident with the early stages of the forma-tion of the Panamanian Isthmus. The discovery thatC. papayais closest to a clade of herbaceous or thin-stemmed species has implications for plant breeders who have so far tried to cross papaya only with
woody highland papayas (Vasconcellea)}
}
- Show RIS reference
TY - JOUR
ID - 21461
AU - Antunes Carvalho,Fernanda
AU - Renner,Susanne
T1 - A dated phylogeny of the papaya family (Caricaceae) reveals the crop?s closest relatives and the family?s biogeographic history
PY - 2012
KW - Long distance dispersal
KW - Molecular clocks
KW - Historical biogeography
KW - Panamanian Isthmus
UR - http://dx.doi.org/10.1016/j.ympev.2012.05.019
N2 - Papaya (Carica papaya) is a crop of great economic importance, and the species was among the first plants
to have its genome sequenced. However, there has never been a complete species-level phylogeny for the
Caricaceae, and the crop?s closest relatives are therefore unknown. We investigated the evolution of the
Caricaceae based on sequences from all species and genera, the monospecificCarica, African Cylicomorpha
with two species, South AmericanJacaratia andVasconcelleawith together c. 28 species, and Mexican/
GuatemalanJarilla andHorovitziawith four species. Most Caricaceae are trees or shrubs; the species of
Jarilla, however, are herbaceous. We generated a matrix of 4711 nuclear and plastid DNA characters
and used maximum likelihood (ML) and Bayesian analysis to infer species relationships, rooting trees
on the Moringaceae. Divergence times were estimated under relaxed and strict molecular clocks, using
different subsets of the data. Ancestral area reconstruction relied on a ML approach. The deepest split
in the Caricaceae occurred during the Late Eocene, when the ancestor of the Neotropical clade arrived
from Africa. In South America, major diversification events coincide with the Miocene northern Andean
uplift and the initial phase of the tectonic collision between South America and Panama resulting in the
Panamanian land bridge.Carica papayais sister to Jarilla/Horovitzia, and all three diverged from South
American Caricaceae in the Oligocene, 27 (22?33) Ma ago, coincident with the early stages of the forma-tion of the Panamanian Isthmus. The discovery thatC. papayais closest to a clade of herbaceous or thin-stemmed species has implications for plant breeders who have so far tried to cross papaya only with
woody highland papayas (Vasconcellea)
L3 - 10.1016/j.ympev.2012.05.019
JF - Molecular Phylogenetics and Evolution
VL - 65
IS -
SP - 46
EP - 53
ER -