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Citation for Study 22698

Citation title: "Phylogenomic analysis reveals a monophyletic Zoopagales (Zoopagomycota, Fungi) with predacious taxa evolving from mycoparasite ancestors".

Study name: "Phylogenomic analysis reveals a monophyletic Zoopagales (Zoopagomycota, Fungi) with predacious taxa evolving from mycoparasite ancestors".

This study is part of submission 22698 (Status: Published).

Citation

Davis W.J., Amses K.R., Smith M.E., Spatafora J.W., Stajich J.E., & James T.Y. 2018. Phylogenomic analysis reveals a monophyletic Zoopagales (Zoopagomycota, Fungi) with predacious taxa evolving from mycoparasite ancestors. Molecular Phylogenetics and Evolution, .

Authors

• Davis W.J. (submitter)
• Amses K.R.
• Smith M.E.
• Spatafora J.W.
• Stajich J.E.
• James T.Y.

Abstract

Previous phylogenomic analyses of Fungi have under sampled taxa from Zoopagales, an order that contains many fungi predacious or parasitic on eukaryotic microbes. We sequenced the genomes of an additional 5 taxa from Zoopagales using single cell methods. We assembled and binned the genomes using a combination of ESOM, RSCU, and GC-coverage blob plots. We inferred a maximum likelihood tree using 192 proteins and performed an ancestral state reconstruction to determine the ancestral life style of the clade. Our results indicate that Zoopagales is a monophyletic lineage and that predacious taxa evolved from mycoparasite ancestors.

External links

About this resource

• Canonical resource URI: http://purl.org/phylo/treebase/phylows/study/TB2:S22698
• Other versions: Nexus NeXML
• Show BibTeX reference

  		@ARTICLE{TreeBASE2Ref28444,
  	 author = {William J Davis and Kevin R Amses and Matthew E. Smith and Joseph W. Spatafora and Jason E. stajich and Timothy Y. James},
  	 title = {Phylogenomic analysis reveals a monophyletic Zoopagales (Zoopagomycota, Fungi) with predacious taxa evolving from mycoparasite ancestors},
  	 year = {2018},
  	 keywords = {},
  	 doi = {},
  	 url = {http://},
  	 pmid = {},
  	 journal = {Molecular Phylogenetics and Evolution},
  	 volume = {},
  	 number = {},
  	 pages = {},
  	 abstract = {Previous phylogenomic analyses of Fungi have under sampled taxa from Zoopagales, an order that contains many fungi predacious or parasitic on eukaryotic microbes. We sequenced the genomes of an additional 5 taxa from Zoopagales using single cell methods. We assembled and binned the genomes using a combination of ESOM, RSCU, and GC-coverage blob plots. We inferred a maximum likelihood tree using 192 proteins and performed an ancestral state reconstruction to determine the ancestral life style of the clade. Our results indicate that Zoopagales is a monophyletic lineage and that predacious taxa evolved from mycoparasite ancestors.}
  }
  		

• Show RIS reference

  		TY  - JOUR
  ID  - 28444
  AU  - Davis,William J
  AU  - Amses,Kevin R
  AU  - Smith,Matthew E.
  AU  - Spatafora,Joseph W.
  AU  - stajich,Jason E.
  AU  - James,Timothy Y.
  T1  - Phylogenomic analysis reveals a monophyletic Zoopagales (Zoopagomycota, Fungi) with predacious taxa evolving from mycoparasite ancestors
  PY  - 2018
  KW  - 
  UR  - http://dx.doi.org/
  N2  - Previous phylogenomic analyses of Fungi have under sampled taxa from Zoopagales, an order that contains many fungi predacious or parasitic on eukaryotic microbes. We sequenced the genomes of an additional 5 taxa from Zoopagales using single cell methods. We assembled and binned the genomes using a combination of ESOM, RSCU, and GC-coverage blob plots. We inferred a maximum likelihood tree using 192 proteins and performed an ancestral state reconstruction to determine the ancestral life style of the clade. Our results indicate that Zoopagales is a monophyletic lineage and that predacious taxa evolved from mycoparasite ancestors.
  L3  - 
  JF  - Molecular Phylogenetics and Evolution
  VL  - 
  IS  - 
  ER  -