@ARTICLE{TreeBASE2Ref29145,
author = {Sara J. van de Kerke and Bikash Shrestha and Tracey A. Ruhlman and Mao-Lun Weng and Robert K Jansen and Cynthia S Jones and Carl D. Schlichting and Samin Hosseini and Setareh Mohammadin and M. Eric Schranz and Freek Bakker},
title = {Plastome based phylogenetics and younger crown node age in Pelargonium},
year = {2018},
keywords = {Pelargonium, Geraniaceae, phylogeny, plastome, time-calibrated},
doi = {},
url = {http://},
pmid = {},
journal = {Molecular Phylogenetics and Evolution},
volume = {},
number = {},
pages = {},
abstract = {The predominantly South-African plant genus Pelargonium L?H?r. (Geraniaceae) displays remarkable morphological diversity, several basic chromosome numbers as well as high levels of organelle genomic rearrangements, and represents the 7th largest Cape Floristic Region clade. In this study, we reconstructed a phylogenetic tree based on 74 plastome exons and nuclear rDNA ITS regions for 120 species, which represents 43 % taxon coverage for Pelargonium. We also performed a dating analysis to examine the timing of the major radiations in the genus.
Phylogenetic analyses of nucleotide, amino acid, and ITS alignments confirmed the previously-documented subgeneric split into five main clades ((C1,C2),(B(A1,A2))) although clade only A1 received low bootstrap support.
Using calibration evidence from a range of sources the Pelargonium crown age was estimated to be 9.8 My old, much younger than previous estimates for the genus but similar to recent studies of other Cape Floristic lineages that are part of both Fynbos and Succulent Karoo biomes.}
}
Citation for Study 23750
Citation title:
"Plastome based phylogenetics and younger crown node age in Pelargonium".
Study name:
"Plastome based phylogenetics and younger crown node age in Pelargonium".
This study is part of submission 23750
(Status: Published).
Citation
Van de kerke S.J., Shrestha B., Ruhlman T.A., Weng M., Jansen R.K., Jones C.S., Schlichting C.D., Hosseini S., Mohammadin S., Schranz M.E., & Bakker F. 2018. Plastome based phylogenetics and younger crown node age in Pelargonium. Molecular Phylogenetics and Evolution, .
Authors
-
Van de kerke S.J.
(submitter)
-
Shrestha B.
-
Ruhlman T.A.
-
Weng M.
-
Jansen R.K.
-
Jones C.S.
-
Schlichting C.D.
-
Hosseini S.
-
Mohammadin S.
-
Schranz M.E.
-
Bakker F.
Abstract
The predominantly South-African plant genus Pelargonium L?H?r. (Geraniaceae) displays remarkable morphological diversity, several basic chromosome numbers as well as high levels of organelle genomic rearrangements, and represents the 7th largest Cape Floristic Region clade. In this study, we reconstructed a phylogenetic tree based on 74 plastome exons and nuclear rDNA ITS regions for 120 species, which represents 43 % taxon coverage for Pelargonium. We also performed a dating analysis to examine the timing of the major radiations in the genus.
Phylogenetic analyses of nucleotide, amino acid, and ITS alignments confirmed the previously-documented subgeneric split into five main clades ((C1,C2),(B(A1,A2))) although clade only A1 received low bootstrap support.
Using calibration evidence from a range of sources the Pelargonium crown age was estimated to be 9.8 My old, much younger than previous estimates for the genus but similar to recent studies of other Cape Floristic lineages that are part of both Fynbos and Succulent Karoo biomes.
Keywords
Pelargonium, Geraniaceae, phylogeny, plastome, time-calibrated
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S23750
- Other versions:
Nexus
NeXML
- Show BibTeX reference
@ARTICLE{TreeBASE2Ref29145,
author = {Sara J. van de Kerke and Bikash Shrestha and Tracey A. Ruhlman and Mao-Lun Weng and Robert K Jansen and Cynthia S Jones and Carl D. Schlichting and Samin Hosseini and Setareh Mohammadin and M. Eric Schranz and Freek Bakker},
title = {Plastome based phylogenetics and younger crown node age in Pelargonium},
year = {2018},
keywords = {Pelargonium, Geraniaceae, phylogeny, plastome, time-calibrated},
doi = {},
url = {http://},
pmid = {},
journal = {Molecular Phylogenetics and Evolution},
volume = {},
number = {},
pages = {},
abstract = {The predominantly South-African plant genus Pelargonium L?H?r. (Geraniaceae) displays remarkable morphological diversity, several basic chromosome numbers as well as high levels of organelle genomic rearrangements, and represents the 7th largest Cape Floristic Region clade. In this study, we reconstructed a phylogenetic tree based on 74 plastome exons and nuclear rDNA ITS regions for 120 species, which represents 43 % taxon coverage for Pelargonium. We also performed a dating analysis to examine the timing of the major radiations in the genus.
Phylogenetic analyses of nucleotide, amino acid, and ITS alignments confirmed the previously-documented subgeneric split into five main clades ((C1,C2),(B(A1,A2))) although clade only A1 received low bootstrap support.
Using calibration evidence from a range of sources the Pelargonium crown age was estimated to be 9.8 My old, much younger than previous estimates for the genus but similar to recent studies of other Cape Floristic lineages that are part of both Fynbos and Succulent Karoo biomes.}
}
- Show RIS reference
TY - JOUR
ID - 29145
AU - van de Kerke,Sara J.
AU - Shrestha,Bikash
AU - Ruhlman,Tracey A.
AU - Weng,Mao-Lun
AU - Jansen,Robert K
AU - Jones,Cynthia S
AU - Schlichting,Carl D.
AU - Hosseini,Samin
AU - Mohammadin,Setareh
AU - Schranz,M. Eric
AU - Bakker,Freek
T1 - Plastome based phylogenetics and younger crown node age in Pelargonium
PY - 2018
KW - Pelargonium
KW - Geraniaceae
KW - phylogeny
KW - plastome
KW - time-calibrated
UR - http://dx.doi.org/
N2 - The predominantly South-African plant genus Pelargonium L?H?r. (Geraniaceae) displays remarkable morphological diversity, several basic chromosome numbers as well as high levels of organelle genomic rearrangements, and represents the 7th largest Cape Floristic Region clade. In this study, we reconstructed a phylogenetic tree based on 74 plastome exons and nuclear rDNA ITS regions for 120 species, which represents 43 % taxon coverage for Pelargonium. We also performed a dating analysis to examine the timing of the major radiations in the genus.
Phylogenetic analyses of nucleotide, amino acid, and ITS alignments confirmed the previously-documented subgeneric split into five main clades ((C1,C2),(B(A1,A2))) although clade only A1 received low bootstrap support.
Using calibration evidence from a range of sources the Pelargonium crown age was estimated to be 9.8 My old, much younger than previous estimates for the genus but similar to recent studies of other Cape Floristic lineages that are part of both Fynbos and Succulent Karoo biomes.
L3 -
JF - Molecular Phylogenetics and Evolution
VL -
IS -
ER -
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