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Citation for Study 1983

Citation title: "A five-gene phylogenetic analysis of the Pezizomycotina".

This study was previously identified under the legacy study ID S1966 (Status: Published).

Citation

Spatafora J., Johnson D., Sung G., Hosaka K., O'rourke B., Serdani M., Spotts R., Lutzoni F., Hofstetter V., Fraker E., Gueidan C., Miadlikowska J.M., Reeb V., Lumbsch T., L?cking R., Schmitt I., Aptroot A., Roux C., Miller A.N., Geiser D., Hestmark G., Arnold A., B?del B., Rauhut A., Hewitt D., Untereiner W., Cole M., Scheidegger C., Schultz M., Sipman H., & Schoch C.L. 2006. A five-gene phylogenetic analysis of the Pezizomycotina. Mycologia, 98: 1018-1028.

Authors

• Spatafora J.
• Johnson D.
• Sung G.
• Hosaka K.
• O'rourke B.
• Serdani M.
• Spotts R.
• Lutzoni F.
• Hofstetter V.
• Fraker E.
• Gueidan C.
• Miadlikowska J.M. 9196607287
• Reeb V.
• Lumbsch T.
• L?cking R.
• Schmitt I.
• Aptroot A.
• Roux C.
• Miller A.N. (217) 244-0439
• Geiser D.
• Hestmark G.
• Arnold A.
• B?del B.
• Rauhut A.
• Hewitt D.
• Untereiner W.
• Cole M.
• Scheidegger C.
• Schultz M.
• Sipman H.
• Schoch C.L.

Abstract

The Pezizomycotina is the largest subphylum of the Ascomycota and includes the vast majority of filamentous, ascoma-producing species. Here we report the results from parsimony and Bayesian phylogenetic analyses of five nuclear loci (SSU rDNA, LSU rDNA, RPB1, RPB2, and EF 1-) from 192 taxa. Nine of the ten classes currently recognized in the classification of the Outline of the Ascomycota (Eriksson 2005) were represented in the sampling. These data strongly supported the monophyly of the Pezizomycotina, and the Arthoniomycetes, Eurotiomycetes, Lecanoromycetes, Orbiliomycetes, and Sordariomycetes. The Pezizomycetes were resolved as monophyletic but not strongly supported by the data. The Leotiomycetes and the Dothideomycetes were not resolved as monophyletic; Geoglossum and Trichoglossum were excluded from the Leotiomycetes and the Dothideomycetes was paraphyletic based on the placement of the Arthoniomycetes. The two most basal classes of the Pezizomycotina were the Orbiliomycetes and Pezizomycetes, both of which comprise species that produce apothecial ascomata. The seven remaining classes formed a monophyletic group that corresponds to Leotiomyceta sensu Eriksson et al. Within the Leotiomyceta, the supraclass clades of (Leotiomycetes s. s., Sordariomycetes) and (Arthoniomycetes, Dothideomycetes) were well supported. These analyses supported the apothecium as the ancestral ascomal morphology of the Pezizomycotina with the perithecium restricted to the Sordariomycetes, the ascostroma restricted to the Eurotiomycetes and Dothideomycetes, and the cleistothecium broadly distributed in Eurotiomycetes, Sordariomycetes and Leotiomycetes. Ordinal membership of the classes, taxonomic revisions, and evolution of ascus morphology and major ecologies are discussed.

About this resource

• Canonical resource URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1983
• Other versions: Nexus NeXML
• Show BibTeX reference

  		@ARTICLE{TreeBASE2Ref17602,
  	 author = {Joseph W.  Spatafora and Desiree Melinda  Johnson and G. H.  Sung and Kentaro  Hosaka and Benjamin  O'Rourke and Maryna  Serdani and Robert  Spotts and Francois M.  Lutzoni and Valerie  Hofstetter and Emily  Fraker and C?cile  Gueidan and Jolanta Maria Miadlikowska and Val?rie  Reeb and T.  Lumbsch and Robert  L?cking and Imke  Schmitt and Andr?  Aptroot and Claude  Roux and Andrew N. Miller and David M.  Geiser and Geir  Hestmark and A. Elizabeth  Arnold and Burkhard  B?del and Alexandra  Rauhut and David  Hewitt and Wendy A.  Untereiner and Mariette S.  Cole and Christoph  Scheidegger and Matthias  Schultz and Harrie  Sipman and Conrad Lamoraal Schoch},
  	 title = {A five-gene phylogenetic analysis of the Pezizomycotina},
  	 year = {2006},
  	 keywords = {},
  	 doi = {},
  	 url = {},
  	 pmid = {},
  	 journal = {Mycologia},
  	 volume = {98},
  	 number = {},
  	 pages = {1018--1028},
  	 abstract = {The Pezizomycotina is the largest subphylum of the Ascomycota and includes the vast majority of filamentous, ascoma-producing species. Here we report the results from parsimony and Bayesian phylogenetic analyses of five nuclear loci (SSU rDNA, LSU rDNA, RPB1, RPB2, and EF 1-) from 192 taxa. Nine of the ten classes currently recognized in the classification of the Outline of the Ascomycota (Eriksson 2005) were represented in the sampling. These data strongly supported the monophyly of the Pezizomycotina, and the Arthoniomycetes, Eurotiomycetes, Lecanoromycetes, Orbiliomycetes, and Sordariomycetes. The Pezizomycetes were resolved as monophyletic but not strongly supported by the data. The Leotiomycetes and the Dothideomycetes were not resolved as monophyletic; Geoglossum and Trichoglossum were excluded from the Leotiomycetes and the Dothideomycetes was paraphyletic based on the placement of the Arthoniomycetes. The two most basal classes of the Pezizomycotina were the Orbiliomycetes and Pezizomycetes, both of which comprise species that produce apothecial ascomata. The seven remaining classes formed a monophyletic group that corresponds to Leotiomyceta sensu Eriksson et al. Within the Leotiomyceta, the supraclass clades of (Leotiomycetes s. s., Sordariomycetes) and (Arthoniomycetes, Dothideomycetes) were well supported. These analyses supported the apothecium as the ancestral ascomal morphology of the Pezizomycotina with the perithecium restricted to the Sordariomycetes, the ascostroma restricted to the Eurotiomycetes and Dothideomycetes, and the cleistothecium broadly distributed in Eurotiomycetes, Sordariomycetes and Leotiomycetes. Ordinal membership of the classes, taxonomic revisions, and evolution of ascus morphology and major ecologies are discussed.}
  }
  		

• Show RIS reference

  		TY  - JOUR
  ID  - 17602
  AU  - Spatafora,Joseph W. 
  AU  - Johnson,Desiree Melinda 
  AU  - Sung,G. H. 
  AU  - Hosaka,Kentaro 
  AU  - O'Rourke,Benjamin 
  AU  - Serdani,Maryna 
  AU  - Spotts,Robert 
  AU  - Lutzoni,Francois M. 
  AU  - Hofstetter,Valerie 
  AU  - Fraker,Emily 
  AU  - Gueidan,C?cile 
  AU  - Miadlikowska,Jolanta Maria
  AU  - Reeb,Val?rie 
  AU  - Lumbsch,T. 
  AU  - L?cking,Robert 
  AU  - Schmitt,Imke 
  AU  - Aptroot,Andr? 
  AU  - Roux,Claude 
  AU  - Miller,Andrew N.
  AU  - Geiser,David M. 
  AU  - Hestmark,Geir 
  AU  - Arnold,A. Elizabeth 
  AU  - B?del,Burkhard 
  AU  - Rauhut,Alexandra 
  AU  - Hewitt,David 
  AU  - Untereiner,Wendy A. 
  AU  - Cole,Mariette S. 
  AU  - Scheidegger,Christoph 
  AU  - Schultz,Matthias 
  AU  - Sipman,Harrie 
  AU  - Schoch,Conrad Lamoraal
  T1  - A five-gene phylogenetic analysis of the Pezizomycotina
  PY  - 2006
  UR  - 
  N2  - The Pezizomycotina is the largest subphylum of the Ascomycota and includes the vast majority of filamentous, ascoma-producing species. Here we report the results from parsimony and Bayesian phylogenetic analyses of five nuclear loci (SSU rDNA, LSU rDNA, RPB1, RPB2, and EF 1-) from 192 taxa. Nine of the ten classes currently recognized in the classification of the Outline of the Ascomycota (Eriksson 2005) were represented in the sampling. These data strongly supported the monophyly of the Pezizomycotina, and the Arthoniomycetes, Eurotiomycetes, Lecanoromycetes, Orbiliomycetes, and Sordariomycetes. The Pezizomycetes were resolved as monophyletic but not strongly supported by the data. The Leotiomycetes and the Dothideomycetes were not resolved as monophyletic; Geoglossum and Trichoglossum were excluded from the Leotiomycetes and the Dothideomycetes was paraphyletic based on the placement of the Arthoniomycetes. The two most basal classes of the Pezizomycotina were the Orbiliomycetes and Pezizomycetes, both of which comprise species that produce apothecial ascomata. The seven remaining classes formed a monophyletic group that corresponds to Leotiomyceta sensu Eriksson et al. Within the Leotiomyceta, the supraclass clades of (Leotiomycetes s. s., Sordariomycetes) and (Arthoniomycetes, Dothideomycetes) were well supported. These analyses supported the apothecium as the ancestral ascomal morphology of the Pezizomycotina with the perithecium restricted to the Sordariomycetes, the ascostroma restricted to the Eurotiomycetes and Dothideomycetes, and the cleistothecium broadly distributed in Eurotiomycetes, Sordariomycetes and Leotiomycetes. Ordinal membership of the classes, taxonomic revisions, and evolution of ascus morphology and major ecologies are discussed.
  L3  - 
  JF  - Mycologia
  VL  - 98
  IS  - 
  SP  - 1018
  EP  - 1028
  ER  -