@ARTICLE{TreeBASE2Ref20088,
author = {Dick Groenenberg and Eike Neubert and Edmund Gittenberger},
title = {Reappraisal of the ??Molecular phylogeny of Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora)??: When poor science meets GenBank},
year = {2011},
keywords = {Helicidae GenBank ?Pseudo-voucher? Misidentification COI 16S},
doi = {10.1016/j.ympev.2011.08.024},
url = {http://www.sciencedirect.com/science/article/pii/S1055790311003836},
pmid = {21930220},
journal = {Molecular Phylogenetics and Evolution},
volume = {},
number = {},
pages = {10},
abstract = {A paper on the ?Molecular phylogeny of Western Palaearctic Helicidae s.l.?, published by Steinke et al. (2004) in this journal, is critically analysed. Several obvious errors are corrected and methodological weaknesses are revealed. BLAST searches on the sequences published in that paper and now in GenBank, showed high percentages of similarity of the alleged species with taxa that are considered only distantly related in the literature. Inspection of the so-called voucher specimens showed that some shells were misidentified, whereas others contained dirt or were bleached, indicating that these had been collected empty. Obviously the sequences published for those species could not have originated from those spec- imens, which cannot be considered vouchers therefore, even if they are from the same locality. In other instances, spurious sequences were published for correctly identified voucher specimens. For several spe- cies for which we collected specimens ourselves, the COI or the 16S sequence, or both, clearly differed from the results published by Steinke et al. The consequences of our results for the molecular data on hel- icid gastropods and their classification are listed.}
}
Citation for Study 11972
Citation title:
"Reappraisal of the ??Molecular phylogeny of Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora)??: When poor science meets GenBank".
Study name:
"Reappraisal of the ??Molecular phylogeny of Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora)??: When poor science meets GenBank".
This study is part of submission 11972
(Status: Published).
Citation
Groenenberg D., Neubert E., & Gittenberger E. 2011. Reappraisal of the ??Molecular phylogeny of Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora)??: When poor science meets GenBank. Molecular Phylogenetics and Evolution, : 10.
Authors
-
Groenenberg D.
(submitter)
0031-715275126
-
Neubert E.
-
Gittenberger E.
Abstract
A paper on the ?Molecular phylogeny of Western Palaearctic Helicidae s.l.?, published by Steinke et al. (2004) in this journal, is critically analysed. Several obvious errors are corrected and methodological weaknesses are revealed. BLAST searches on the sequences published in that paper and now in GenBank, showed high percentages of similarity of the alleged species with taxa that are considered only distantly related in the literature. Inspection of the so-called voucher specimens showed that some shells were misidentified, whereas others contained dirt or were bleached, indicating that these had been collected empty. Obviously the sequences published for those species could not have originated from those spec- imens, which cannot be considered vouchers therefore, even if they are from the same locality. In other instances, spurious sequences were published for correctly identified voucher specimens. For several spe- cies for which we collected specimens ourselves, the COI or the 16S sequence, or both, clearly differed from the results published by Steinke et al. The consequences of our results for the molecular data on hel- icid gastropods and their classification are listed.
Keywords
Helicidae GenBank ?Pseudo-voucher? Misidentification COI 16S
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S11972
- Other versions:
Nexus
NeXML
- Show BibTeX reference
@ARTICLE{TreeBASE2Ref20088,
author = {Dick Groenenberg and Eike Neubert and Edmund Gittenberger},
title = {Reappraisal of the ??Molecular phylogeny of Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora)??: When poor science meets GenBank},
year = {2011},
keywords = {Helicidae GenBank ?Pseudo-voucher? Misidentification COI 16S},
doi = {10.1016/j.ympev.2011.08.024},
url = {http://www.sciencedirect.com/science/article/pii/S1055790311003836},
pmid = {21930220},
journal = {Molecular Phylogenetics and Evolution},
volume = {},
number = {},
pages = {10},
abstract = {A paper on the ?Molecular phylogeny of Western Palaearctic Helicidae s.l.?, published by Steinke et al. (2004) in this journal, is critically analysed. Several obvious errors are corrected and methodological weaknesses are revealed. BLAST searches on the sequences published in that paper and now in GenBank, showed high percentages of similarity of the alleged species with taxa that are considered only distantly related in the literature. Inspection of the so-called voucher specimens showed that some shells were misidentified, whereas others contained dirt or were bleached, indicating that these had been collected empty. Obviously the sequences published for those species could not have originated from those spec- imens, which cannot be considered vouchers therefore, even if they are from the same locality. In other instances, spurious sequences were published for correctly identified voucher specimens. For several spe- cies for which we collected specimens ourselves, the COI or the 16S sequence, or both, clearly differed from the results published by Steinke et al. The consequences of our results for the molecular data on hel- icid gastropods and their classification are listed.}
}
- Show RIS reference
TY - JOUR
ID - 20088
AU - Groenenberg,Dick
AU - Neubert,Eike
AU - Gittenberger,Edmund
T1 - Reappraisal of the ??Molecular phylogeny of Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora)??: When poor science meets GenBank
PY - 2011
KW - Helicidae GenBank ?Pseudo-voucher? Misidentification COI 16S
UR - http://www.sciencedirect.com/science/article/pii/S1055790311003836
N2 - A paper on the ?Molecular phylogeny of Western Palaearctic Helicidae s.l.?, published by Steinke et al. (2004) in this journal, is critically analysed. Several obvious errors are corrected and methodological weaknesses are revealed. BLAST searches on the sequences published in that paper and now in GenBank, showed high percentages of similarity of the alleged species with taxa that are considered only distantly related in the literature. Inspection of the so-called voucher specimens showed that some shells were misidentified, whereas others contained dirt or were bleached, indicating that these had been collected empty. Obviously the sequences published for those species could not have originated from those spec- imens, which cannot be considered vouchers therefore, even if they are from the same locality. In other instances, spurious sequences were published for correctly identified voucher specimens. For several spe- cies for which we collected specimens ourselves, the COI or the 16S sequence, or both, clearly differed from the results published by Steinke et al. The consequences of our results for the molecular data on hel- icid gastropods and their classification are listed.
L3 - 10.1016/j.ympev.2011.08.024
JF - Molecular Phylogenetics and Evolution
VL -
IS -
ER -