@ARTICLE{TreeBASE2Ref22493,
author = {Samantha Fernandez-Brime and Jordi Vila and Antonio Ortega},
title = {Some new and interesting taxa of Cortinarius subgenus Phlegmacium from the European Mediterranean Basin},
year = {2013},
keywords = {Agaricales, BAli-Phy, Cortinariaceae, fungal taxonomy, molecular phylogenetics, nuITS.},
doi = {},
url = {http://},
pmid = {},
journal = {Mycologia},
volume = {},
number = {},
pages = {},
abstract = {In this paper, we have attempted to clarify the taxonomy and nomenclature of several taxa of the genus Cortinarius subgenus Phlegmacium. To this aim, we have used a combination of morphological and molecular data. The evolutionary relationships of the species were inferred by comparison of the nuITS by means of weighted maximum parsimony, maximum likelihood, and two different types of Bayesian methods (with and without a priori alignments). Phylogenetic resolution and support of all or most of the species included in this study and their relationships were possible only when including the phylogenetic signal from ambiguously aligned regions in weighted maximum parsimony analyses (recoded INAASE characters) and when analysis simultaneously optimized alignment and phylogeny (using BAli-phy). As a result of the morphological and phylogenetic studies, three species are described as new, Cortinarius mediterraneensis, C. cistoglaucopus, and C. palazonianus, and one new combination is proposed for C. dionysae f. olivaceus. Species descriptions are provided for these taxonomic and nomenclatural novelties, along with discussions of morphological and phylogenetic affinities to closely related taxa. Scanning microphotographs of the basidiospores are provided for the discussed taxa, and color pictures of the basidiomes in their natural habitat are provided for C. cistoglaucopus, C. mediterraneensis, and C. palazonianus.}
}
Citation for Study 14837
Citation title:
"Some new and interesting taxa of Cortinarius subgenus Phlegmacium from the European Mediterranean Basin".
Study name:
"Some new and interesting taxa of Cortinarius subgenus Phlegmacium from the European Mediterranean Basin".
This study is part of submission 14837
(Status: Published).
Citation
Fernandez-brime S., Vila J., & Ortega A. 2013. Some new and interesting taxa of Cortinarius subgenus Phlegmacium from the European Mediterranean Basin. Mycologia, .
Authors
-
Fernandez-brime S.
(submitter)
34934039863
-
Vila J.
-
Ortega A.
Abstract
In this paper, we have attempted to clarify the taxonomy and nomenclature of several taxa of the genus Cortinarius subgenus Phlegmacium. To this aim, we have used a combination of morphological and molecular data. The evolutionary relationships of the species were inferred by comparison of the nuITS by means of weighted maximum parsimony, maximum likelihood, and two different types of Bayesian methods (with and without a priori alignments). Phylogenetic resolution and support of all or most of the species included in this study and their relationships were possible only when including the phylogenetic signal from ambiguously aligned regions in weighted maximum parsimony analyses (recoded INAASE characters) and when analysis simultaneously optimized alignment and phylogeny (using BAli-phy). As a result of the morphological and phylogenetic studies, three species are described as new, Cortinarius mediterraneensis, C. cistoglaucopus, and C. palazonianus, and one new combination is proposed for C. dionysae f. olivaceus. Species descriptions are provided for these taxonomic and nomenclatural novelties, along with discussions of morphological and phylogenetic affinities to closely related taxa. Scanning microphotographs of the basidiospores are provided for the discussed taxa, and color pictures of the basidiomes in their natural habitat are provided for C. cistoglaucopus, C. mediterraneensis, and C. palazonianus.
Keywords
Agaricales, BAli-Phy, Cortinariaceae, fungal taxonomy, molecular phylogenetics, nuITS.
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S14837
- Other versions:
Nexus
NeXML
- Show BibTeX reference
@ARTICLE{TreeBASE2Ref22493,
author = {Samantha Fernandez-Brime and Jordi Vila and Antonio Ortega},
title = {Some new and interesting taxa of Cortinarius subgenus Phlegmacium from the European Mediterranean Basin},
year = {2013},
keywords = {Agaricales, BAli-Phy, Cortinariaceae, fungal taxonomy, molecular phylogenetics, nuITS.},
doi = {},
url = {http://},
pmid = {},
journal = {Mycologia},
volume = {},
number = {},
pages = {},
abstract = {In this paper, we have attempted to clarify the taxonomy and nomenclature of several taxa of the genus Cortinarius subgenus Phlegmacium. To this aim, we have used a combination of morphological and molecular data. The evolutionary relationships of the species were inferred by comparison of the nuITS by means of weighted maximum parsimony, maximum likelihood, and two different types of Bayesian methods (with and without a priori alignments). Phylogenetic resolution and support of all or most of the species included in this study and their relationships were possible only when including the phylogenetic signal from ambiguously aligned regions in weighted maximum parsimony analyses (recoded INAASE characters) and when analysis simultaneously optimized alignment and phylogeny (using BAli-phy). As a result of the morphological and phylogenetic studies, three species are described as new, Cortinarius mediterraneensis, C. cistoglaucopus, and C. palazonianus, and one new combination is proposed for C. dionysae f. olivaceus. Species descriptions are provided for these taxonomic and nomenclatural novelties, along with discussions of morphological and phylogenetic affinities to closely related taxa. Scanning microphotographs of the basidiospores are provided for the discussed taxa, and color pictures of the basidiomes in their natural habitat are provided for C. cistoglaucopus, C. mediterraneensis, and C. palazonianus.}
}
- Show RIS reference
TY - JOUR
ID - 22493
AU - Fernandez-Brime,Samantha
AU - Vila,Jordi
AU - Ortega,Antonio
T1 - Some new and interesting taxa of Cortinarius subgenus Phlegmacium from the European Mediterranean Basin
PY - 2013
KW - Agaricales
KW - BAli-Phy
KW - Cortinariaceae
KW - fungal taxonomy
KW - molecular phylogenetics
KW - nuITS.
UR - http://dx.doi.org/
N2 - In this paper, we have attempted to clarify the taxonomy and nomenclature of several taxa of the genus Cortinarius subgenus Phlegmacium. To this aim, we have used a combination of morphological and molecular data. The evolutionary relationships of the species were inferred by comparison of the nuITS by means of weighted maximum parsimony, maximum likelihood, and two different types of Bayesian methods (with and without a priori alignments). Phylogenetic resolution and support of all or most of the species included in this study and their relationships were possible only when including the phylogenetic signal from ambiguously aligned regions in weighted maximum parsimony analyses (recoded INAASE characters) and when analysis simultaneously optimized alignment and phylogeny (using BAli-phy). As a result of the morphological and phylogenetic studies, three species are described as new, Cortinarius mediterraneensis, C. cistoglaucopus, and C. palazonianus, and one new combination is proposed for C. dionysae f. olivaceus. Species descriptions are provided for these taxonomic and nomenclatural novelties, along with discussions of morphological and phylogenetic affinities to closely related taxa. Scanning microphotographs of the basidiospores are provided for the discussed taxa, and color pictures of the basidiomes in their natural habitat are provided for C. cistoglaucopus, C. mediterraneensis, and C. palazonianus.
L3 -
JF - Mycologia
VL -
IS -
ER -
Go to search
Citation
Taxa
Matrices
Trees
Analyses
