@ARTICLE{TreeBASE2Ref20088,
author = {Dick Groenenberg and Eike Neubert and Edmund Gittenberger},
title = {Reappraisal of the ??Molecular phylogeny of Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora)??: When poor science meets GenBank},
year = {2011},
keywords = {Helicidae GenBank ?Pseudo-voucher? Misidentification COI 16S},
doi = {10.1016/j.ympev.2011.08.024},
url = {http://www.sciencedirect.com/science/article/pii/S1055790311003836},
pmid = {21930220},
journal = {Molecular Phylogenetics and Evolution},
volume = {},
number = {},
pages = {10},
abstract = {A paper on the ?Molecular phylogeny of Western Palaearctic Helicidae s.l.?, published by Steinke et al. (2004) in this journal, is critically analysed. Several obvious errors are corrected and methodological weaknesses are revealed. BLAST searches on the sequences published in that paper and now in GenBank, showed high percentages of similarity of the alleged species with taxa that are considered only distantly related in the literature. Inspection of the so-called voucher specimens showed that some shells were misidentified, whereas others contained dirt or were bleached, indicating that these had been collected empty. Obviously the sequences published for those species could not have originated from those spec- imens, which cannot be considered vouchers therefore, even if they are from the same locality. In other instances, spurious sequences were published for correctly identified voucher specimens. For several spe- cies for which we collected specimens ourselves, the COI or the 16S sequence, or both, clearly differed from the results published by Steinke et al. The consequences of our results for the molecular data on hel- icid gastropods and their classification are listed.}
}
Taxa for tree 48902 of Study 11972
Citation title:
"Reappraisal of the ??Molecular phylogeny of Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora)??: When poor science meets GenBank".
Study name:
"Reappraisal of the ??Molecular phylogeny of Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora)??: When poor science meets GenBank".
This study is part of submission 11972
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
639802 |
Albinaria sp. AY546262 GR |
|
|
639782 |
Arianta arbustorum AF296940 NL |
45985
|
5445233
|
639790 |
Arianta arbustorum AF296945 FR |
45985
|
5445233
|
639765 |
Arianta arbustorum AY546263 CH |
45985
|
5445233
|
639792 |
Caracollina lenticula AY546265 ES |
265979
|
5977481
|
639801 |
Caracollina lenticula JF717793 IT |
265979
|
5977481
|
639785 |
Cepaea nemoralis AY546270 DE |
28835
|
2688795
|
639775 |
Chilostoma cingulatum AY546274 IT |
225490
|
5716686
|
639770 |
Chilostoma cingulatum JF717794 AT |
225490
|
5716686
|
639772 |
Chilostoma cingulatum JF717795 IT |
225490
|
5716686
|
639768 |
Cochlicella acuta AY546275 FR |
145618
|
3328442
|
639774 |
Cochlicella acuta HQ237461 AU |
145618
|
3328442
|
639795 |
Eobania vermiculata AY546277 FR |
212653
|
2688797
|
639796 |
Helicigona lapicida AY546280 DE |
145624
|
5963469
|
639784 |
Helicigona lapicida andorrica JF717796 ES |
|
|
639783 |
Helicigona lapicida andorrica JF717797 ES |
|
|
639787 |
Helicigona lapicida andorrica JF717798 ES |
|
|
639799 |
Helicigona lapicida lapicida JF717799 BE |
|
|
639789 |
Helicigona lapicida lapicida JF717800 DE |
|
|
639777 |
Helicodonta obvoluta AY546281 CH |
265986
|
5549408
|
639776 |
Helicodonta obvoluta JF717801 NL |
265986
|
5549408
|
639778 |
Helicopsis striata AY546282 DE |
265988
|
5723271
|
639769 |
Iberus gualtierianus AY546285 ES |
265991
|
5977485
|
639791 |
Iberus gualtierianus gualtierianus DQ822166 ES |
316608
|
6849549
|
639803 |
Iberus marmoratus EF440264 ES |
440503
|
|
639797 |
Isognomostoma isognomostoma AY546286 DE |
265993
|
5668605
|
639773 |
Isognomostoma isognomostomos JF717802 IT |
265993
|
9538653
|
639788 |
Isognomostoma isognomostomos JF717803 IT |
265993
|
9538653
|
639786 |
Marmorana signata JF717804 IT |
|
|
639794 |
Oestophora turriplana AY546289 PT |
265997
|
5977487
|
639781 |
Otala lactea AY937263 ES |
225486
|
2688801
|
639798 |
Otala punctata AY546290 ES |
265998
|
5589624
|
639800 |
Otala punctata JF717805 ES |
265998
|
5589624
|
639793 |
Otala punctata JF717806 ES |
265998
|
5589624
|
639771 |
Otala punctata JF717807 ES |
265998
|
5589624
|
639780 |
Pseudotachea splendida AY546292 ES |
266000
|
5977488
|
639779 |
Pseudotachea splendida AY937265 ES |
266000
|
5977488
|
639767 |
Zonites algirus AY546301 FR |
266011
|
5551296
|
639766 |
Zonites algirus JF717808 GR |
266011
|
5551296
|