@ARTICLE{TreeBASE2Ref20088,
author = {Dick Groenenberg and Eike Neubert and Edmund Gittenberger},
title = {Reappraisal of the ??Molecular phylogeny of Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora)??: When poor science meets GenBank},
year = {2011},
keywords = {Helicidae GenBank ?Pseudo-voucher? Misidentification COI 16S},
doi = {10.1016/j.ympev.2011.08.024},
url = {http://www.sciencedirect.com/science/article/pii/S1055790311003836},
pmid = {21930220},
journal = {Molecular Phylogenetics and Evolution},
volume = {},
number = {},
pages = {10},
abstract = {A paper on the ?Molecular phylogeny of Western Palaearctic Helicidae s.l.?, published by Steinke et al. (2004) in this journal, is critically analysed. Several obvious errors are corrected and methodological weaknesses are revealed. BLAST searches on the sequences published in that paper and now in GenBank, showed high percentages of similarity of the alleged species with taxa that are considered only distantly related in the literature. Inspection of the so-called voucher specimens showed that some shells were misidentified, whereas others contained dirt or were bleached, indicating that these had been collected empty. Obviously the sequences published for those species could not have originated from those spec- imens, which cannot be considered vouchers therefore, even if they are from the same locality. In other instances, spurious sequences were published for correctly identified voucher specimens. For several spe- cies for which we collected specimens ourselves, the COI or the 16S sequence, or both, clearly differed from the results published by Steinke et al. The consequences of our results for the molecular data on hel- icid gastropods and their classification are listed.}
}
Taxa for tree 48903 of Study 11972
Citation title:
"Reappraisal of the ??Molecular phylogeny of Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora)??: When poor science meets GenBank".
Study name:
"Reappraisal of the ??Molecular phylogeny of Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora)??: When poor science meets GenBank".
This study is part of submission 11972
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
639846 |
Albinaria caerulea AY546342 GR |
42349
|
5436937
|
639845 |
Arianta arbustorum AY546343 CH |
45985
|
5445233
|
639830 |
Arianta arbustorum JF717809 FR |
45985
|
5445233
|
639821 |
Arianta arbustorum JF717810 NL |
45985
|
5445233
|
639841 |
Caracollina lenticula AY546345 ES |
265979
|
5977481
|
639827 |
Caracollina lenticula JF717811 IT |
265979
|
5977481
|
639842 |
Cepaea nemoralis AY546350 DE |
28835
|
2688795
|
639832 |
Chilostoma cingulatum AY546354 IT |
225490
|
5716686
|
639806 |
Chilostoma cingulatum JF717812 AT |
225490
|
5716686
|
639824 |
Chilostoma cingulatum JF717813 IT |
225490
|
5716686
|
639812 |
Cochlicella acuta AY546355 FR |
145618
|
3328442
|
639805 |
Cochlicella acuta AY741442 IT |
145618
|
3328442
|
639840 |
Cochlicella acuta AY741443 IT |
145618
|
3328442
|
639817 |
Eobania vermiculata AY546357 FR |
212653
|
2688797
|
639831 |
Eobania vermiculata AY741409 IT |
212653
|
2688797
|
639825 |
Helicigona lapicida AY546360 DE |
145624
|
5963469
|
639810 |
Helicigona lapicida andorrica JF717814 ES |
|
|
639837 |
Helicigona lapicida andorrica JF717815 ES |
|
|
639814 |
Helicigona lapicida andorrica JF717816 ES |
|
|
639826 |
Helicigona lapicida lapicida JF717817 BE |
|
|
639844 |
Helicigona lapicida lapicida JF717818 DE |
|
|
639807 |
Helicodonta obvoluta AY546361 CH |
265986
|
5549408
|
639804 |
Helicodonta obvoluta JF717819 NL |
265986
|
5549408
|
639822 |
Helicopsis striata AY546362 DE |
265988
|
5723271
|
639834 |
Iberus gualterianus AY546365 ES |
265991
|
10243215
|
639843 |
Iberus gualtierianus gualtierianus DQ822116 ES |
316608
|
6849549
|
639811 |
Iberus marmoratus EF440214 ES |
440503
|
|
639816 |
Isognomostoma isognomostoma AY546366 DE |
265993
|
5668605
|
639815 |
Isognomostoma isognomostomos JF717820 IT |
265993
|
9538653
|
639809 |
Isognomostoma isognomostomos JF717821 IT |
265993
|
9538653
|
639829 |
Marmorana signata JF717822 IT |
|
|
639838 |
Oestophora turriplana AY546369 PT |
265997
|
5977487
|
639819 |
Otala lactea AY937264 ES |
225486
|
2688801
|
639808 |
Otala punctata AY546370 ES |
265998
|
5589624
|
639828 |
Otala punctata JF717823 ES |
265998
|
5589624
|
639835 |
Otala punctata JF717824 ES |
265998
|
5589624
|
639813 |
Otala punctata JF717825 ES |
265998
|
5589624
|
639823 |
Pseudotachea splendida AY546372 ES |
266000
|
5977488
|
639818 |
Pseudotachea splendida AY937266 ES |
266000
|
5977488
|
639820 |
Zonites algirus AY546381 FR |
266011
|
5551296
|
639836 |
Zonites algirus JF717826 GR |
266011
|
5551296
|
639833 |
Zonites casius EF568987 GR |
462801
|
|
639839 |
Zonites pergranulatus cycladicus EF568963 GR |
|
|