@ARTICLE{TreeBASE2Ref25974,
author = {Hisayuki Komaki and Natsuko Ichikawa and Akira Hosoyama and Moriyuki Hamada and Enjuro Harunari and Arisa Ishikawa and Yasuhiro Igarashi},
title = {Draft genome sequence of Micromonospora sp. DSW705 and distribution of biosynthetic gene clusters for depsipeptides bearing 4-amino-2,4-pentadienoate in actinomycetes},
year = {2016},
keywords = {Actinomycete, BE-43547, Micromonospora, nonribosomal peptide synthetase, polyketide synthase, rakicidin, taxonomy, vinylamycin},
doi = {},
url = {http://},
pmid = {},
journal = {Standards in Genomic Sciences},
volume = {},
number = {},
pages = {},
abstract = {Here, we report the draft genome sequence of Micromonospora sp. DSW705 (=NBRC 110037), a producer of antitumor cyclic depsipeptides rakicidins A and B, together with the features of this strain and generation, annotation, and analysis of the genome sequence. The 6.8 Mb genome of Micromonospora sp. DSW705 encodes 6,219 putative ORFs, of which 4,846 are assigned with COG categories. The genome harbors at least three type I polyketide synthase (PKS) gene clusters, one nonribosomal peptide synthetase (NRPS) gene clusters, and three hybrid PKS/NRPS gene clusters. A hybrid PKS/NRPS gene cluster encoded in Scaffold02 is responsible for rakicidin synthesis. DNA database search indicated that the biosynthetic gene clusters for depsipeptides bearing 4-amino-2,4-pentadienoate (APDA) are widely present in taxonomically diverse actinomycetes.}
}
Taxa for matrix 1166 of Study 19405
Citation title:
"Draft genome sequence of Micromonospora sp. DSW705 and distribution of biosynthetic gene clusters for depsipeptides bearing 4-amino-2,4-pentadienoate in actinomycetes".
Study name:
"Draft genome sequence of Micromonospora sp. DSW705 and distribution of biosynthetic gene clusters for depsipeptides bearing 4-amino-2,4-pentadienoate in actinomycetes".
This study is part of submission 19405
(Status: Published).
Taxa
Return to matrix row view
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
172250 |
Amphilogia gyrosa CMW10469 NEW ZEALAND |
114682
|
9732802
|
172280 |
Amphilogia gyrosa CMW10470 NEW ZEALAND |
114682
|
9732802
|
31145 |
Celoporthe dispersa CMW13645 SOUTH AFRICA |
224443
|
10221436
|
31153 |
Celoporthe dispersa CMW13646 SOUTH AFRICA |
224443
|
10221436
|
31170 |
Celoporthe dispersa CMW13936 SOUTH AFRICA |
224443
|
10221436
|
31147 |
Celoporthe dispersa CMW13937 SOUTH AFRICA |
224443
|
10221436
|
172262 |
Celoporthe dispersa CMW9976 SOUTH AFRICA |
224443
|
10221436
|
172254 |
Celoporthe dispersa CMW9978 SOUTH AFRICA |
224443
|
10221436
|
31146 |
Celoporthe sp. CMW 10779 INDONESIA |
|
|
31142 |
Celoporthe sp. CMW 10780 INDONESIA |
|
|
31144 |
Celoporthe sp. CMW 10781 INDONESIA |
|
|
172275 |
Chrysoporthe austroafricana CMW2113 SOUTH AFRICA |
354353
|
5985271
|
172249 |
Chrysoporthe austroafricana CMW9327 SOUTH AFRICA |
354353
|
5985271
|
31149 |
Chrysoporthe cubensis CMW10639 COLOMBIA |
305400
|
5981323
|
172257 |
Chrysoporthe cubensis CMW10669 CONGO |
305400
|
5981323
|
31141 |
Chrysoporthe cubensis CMW11290 INDONESIA |
305400
|
5981323
|
172268 |
Chrysoporthe cubensis CMW8651 SULAWESI |
305400
|
5981323
|
31157 |
Chrysoporthella hodgesiana CMW10625 COLOMBIA |
305856
|
5981356
|
172258 |
Chrysoporthella hodgesiana CMW10641 COLOMBIA |
305856
|
5981356
|
172263 |
Cryphonectria parasitica CMW13749 JAPAN |
5116
|
3872340
|
172261 |
Cryphonectria parasitica CMW7048 USA |
5116
|
3872340
|
172260 |
Cryphonectria radicalis CMW10436 PORTUGAL |
40262
|
3192162
|
172253 |
Cryphonectria radicalis CMW10455 ITALY |
40262
|
3192162
|
172276 |
Cryphonectria radicalis CMW10477 ITALY |
40262
|
3192162
|
172266 |
Cryphonectria radicalis CMW10484 ITALY |
40262
|
3192162
|
172267 |
Diaporthe ambigua CMW5288 |
73123
|
3097777
|
172255 |
Diaporthe ambigua CMW5587 |
73123
|
3097777
|
172277 |
Endothia gyrosa CMW10442 USA |
40263
|
1620948
|
172265 |
Endothia gyrosa CMW2091 USA |
40263
|
1620948
|
172252 |
Holocryphia eucalypti CMW14546 SOUTH AFRICA |
179777
|
10200787
|
172270 |
Holocryphia eucalypti CMW7037 AUSTRALIA |
179777
|
10200787
|
172271 |
Rostraureum tropicale CMW10796 ECUADOR |
220453
|
5972313
|
172272 |
Rostraureum tropicale CMW9971 ECUADOR |
220453
|
5972313
|