@ARTICLE{TreeBASE2Ref21411,
author = {Johannes de Gruyter and Joyce H. C. Woudenberg and Maikel M. Aveskamp and Gerard J.M. Verkley and Johannes (Ewald) Zacharias Groenewald and Pedro W. Crous},
title = {Redisposition of Phoma-like anamorphs in Pleosporales},
year = {2012},
keywords = {coelomycetes, Coniothyriaceae, Cucurbitariaceae, Leptosphaeriaceae, Melanommataceae, molecular phylogeny, Montagnulaceae, Phaeosphaeriaceae, Pleosporaceae, Sporormiaceae, taxonomy, Trematosphaeriaceae},
doi = {10.3114/sim0004},
url = {http://},
pmid = {},
journal = {Studies in Mycology},
volume = {75},
number = {},
pages = {1--36},
abstract = {The anamorphic genus Phoma was subdivided into nine sections based on morphological characters, and included teleomorphs in Didymella, Leptosphaeria,
Pleospora and Mycosphaerella, suggesting the polyphyly of the genus. Recent molecular, phylogenetic studies led to the conclusion that Phoma should be restricted to
Didymellaceae. The present study focuses on the taxonomy of excluded Phoma species, currently classified in Phoma sections Plenodomus, Heterospora and Pilosa. Species
of Leptosphaeria and Phoma section Plenodomus are reclassified in Plenodomus, Subplenodomus gen. nov., Leptosphaeria and Paraleptosphaeria gen. nov., based on the
phylogeny determined by analysis of sequence data of the large subunit 28S nrDNA (LSU) and Internal Transcribed Spacer regions 1 & 2 and 5.8S nrDNA (ITS). Phoma
heteromorphospora, type species of Phoma section Heterospora, and its allied species Phoma dimorphospora, are transferred to the genus Heterospora stat. nov. The Phoma
acuta complex (teleomorph Leptosphaeria doliolum), is revised based on a multilocus sequence analysis of the LSU, ITS, small subunit 18S nrDNA (SSU), ?-tubulin (TUB), and
chitin synthase 1 (CHS-1) regions. Species of Phoma section Pilosa and allied Ascochyta species were determined to belong to Pleosporaceae based on analysis of actin (ACT)
sequence data. Anamorphs that are similar morphologically to Phoma and described in Ascochyta, Asteromella, Coniothyrium, Plectophomella, Pleurophoma and Pyrenochaeta
are included in this study. Phoma-like species, which grouped outside the Pleosporineae based on a LSU sequence analysis, are transferred to the genera Aposphaeria,
Paraconiothyrium and Westerdykella. The genera Medicopsis gen. nov. and Nigrograna gen. nov. are introduced to accommodate the medically important species formerly
known as Pyrenochaeta romeroi and Pyrenochaeta mackinnonii, respectively.}
}
Taxa for tree 57811 of Study 13458
Citation title:
"Redisposition of Phoma-like anamorphs in Pleosporales".
Study name:
"Redisposition of Phoma-like anamorphs in Pleosporales".
This study is part of submission 13458
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
909883 |
Coniothyrium palmarum CBS 400.71 |
300248
|
3872347
|
909903 |
Cucurbitaria berberidis CBS 363.93 |
45142
|
1449024
|
909909 |
Leptosphaeria biglobosa CBS 119951 |
220672
|
3363130
|
909952 |
Leptosphaeria biglobosa DAOM 229269 |
220672
|
3363130
|
909944 |
Leptosphaeria collinsoniae CBS 120227 |
|
3152746
|
909906 |
Leptosphaeria doliolums doliolum CBS 505.75 |
|
|
909916 |
Leptosphaeria dryadis CBS 643.86 |
178141
|
3074922
|
909900 |
Leptosphaeria fallaciosa CBS 414.62 |
|
3111313
|
909890 |
Leptosphaeria hendersoniae CBS 113702 |
|
3180936
|
909953 |
Leptosphaeria libanotis CBS 113795 |
|
3110742
|
909925 |
Leptosphaeria macrospora CBS 114198 |
372054
|
3121379
|
909881 |
Leptosphaeria nitschkei CBS 306.51 |
|
3098729
|
909940 |
Leptosphaeria praetermissa CBS 114591 |
|
3127561
|
909915 |
Neophaeosphaeria filamentosa CBS 102202 |
125371
|
4037290
|
909912 |
Phoma acuta acuta CBS 541.66 |
|
3268160
|
909955 |
Phoma acuta errabunda CBS 125978 |
|
3234215
|
909948 |
Phoma acuta errabunda CBS 617.75 |
|
3234215
|
909907 |
Phoma acuta phlogis CBS 125979 |
|
3234214
|
909939 |
Phoma acuta phlogis CBS 155.94 |
|
3234214
|
909877 |
Phoma agnita CBS 121.89 |
|
3918925
|
909918 |
Phoma agnita CBS 126584 |
|
3918925
|
909922 |
Phoma apiicola CBS 285.72 |
|
3071598
|
909895 |
Phoma apiicola CBS 504.91 |
|
3071598
|
909913 |
Phoma carteri CBS 101633 |
|
3365750
|
909924 |
Phoma carteri CBS 105.91 |
|
3365750
|
909899 |
Phoma conferta CBS 375.64 |
|
3019146
|
909947 |
Phoma congesta CBS 244.64 |
|
3234399
|
909891 |
Phoma dimorphospora CBS 165.78 |
|
3198639
|
909928 |
Phoma dimorphospora CBS 345.78 |
|
3198639
|
909878 |
Phoma doliolum CBS 125977 |
|
3119309
|
909892 |
Phoma doliolum CBS 616.75 |
|
3119309
|
909934 |
Phoma drobnjacensis CBS 269.92 |
|
3097412
|
909897 |
Phoma drobnjacensis CBS 270.92 |
|
3097412
|
909885 |
Phoma enteroleuca enteroleuca CBS 831.84 |
|
3922462
|
909920 |
Phoma enteroleuca influorescens PD73.1382 |
|
3032584
|
909882 |
Phoma enteroleuca.enteroleuca CBS 142.84 |
|
3922462
|
909901 |
Phoma enteroleuca.influorescens CBS 143.84 |
|
3032584
|
909919 |
Phoma etheridgei CBS 125980 |
|
3235767
|
909946 |
Phoma glycinicola CBS 124141 |
|
3365757
|
909902 |
Phoma glycinicola IMI 294986 |
|
3365757
|
909886 |
Phoma herbarum CBS 615.75 |
73001
|
3872348
|
909956 |
Phoma heteromorphospora CBS 115.96 |
565428
|
3030450
|
909930 |
Phoma heteromorphospora CBS 448.68 |
565428
|
3030450
|
909923 |
Phoma intricans CBS 139.78 |
|
3284567
|
909962 |
Phoma korfii CBS 101638 |
|
3294867
|
909888 |
Phoma leonuri CBS 125975 |
|
3071891
|
909927 |
Phoma leonuri CBS 389.8 |
|
3071891
|
909898 |
Phoma lingam CBS 260.94 |
5022
|
3067437
|
909959 |
Phoma lingam CBS 275.63 |
5022
|
3067437
|
909943 |
Phoma lupini CBS 248.92 |
|
1452272
|
909933 |
Phoma macdonaldii 386.8 |
301713
|
3198651
|
909950 |
Phoma macdonaldii CBS 381.67 |
301713
|
3198651
|
909938 |
Phoma macrocapsa CBS 640.93 |
|
3104649
|
909887 |
Phoma multipora CBS 353.65 |
|
3214009
|
909937 |
Phoma multipora CBS 501.91 |
|
3214009
|
909935 |
Phoma pedicularis CBS 126582 |
|
1452296
|
909914 |
Phoma pedicularis CBS 390.8 |
|
1452296
|
909904 |
Phoma pimpinellae CBS 101637 |
|
3294868
|
909941 |
Phoma rubefaciens CBS 223.77 |
|
3183961
|
909961 |
Phoma rubefaciens CBS 387.8 |
|
3183961
|
909889 |
Phoma sclerotioides CBS 144.84 |
387323
|
3074754
|
909911 |
Phoma sclerotioides CBS 148.84 |
387323
|
3074754
|
909949 |
Phoma septicidalis CBS 101636 |
|
3198660
|
909921 |
Phoma septicidalis CBS 188.71 |
|
3198660
|
909936 |
Phoma septicidalis CBS 856.97 |
|
3198660
|
909945 |
Phoma sydowii CBS 125976 |
|
3029137
|
909929 |
Phoma sydowii CBS 385.8 |
|
3029137
|
909894 |
Phoma tracheiphila CBS 127250 |
131347
|
3198665
|
909908 |
Phoma tracheiphila CBS 551.93 |
131347
|
3198665
|
909876 |
Phoma valerianae CBS 499.91 |
|
3134886
|
909884 |
Phoma valerianae CBS 630.68 |
|
3134886
|
909910 |
Phoma vasinfecta CBS 539.63 |
|
3234217
|
909954 |
Phoma veronicicola CBS 126583 |
|
3022801
|
909893 |
Phoma veronicicola CBS 145.84 |
|
3022801
|
909917 |
Phoma violicola CBS 100272 |
646073
|
3124522
|
909960 |
Phoma violicola CBS 306.68 |
646073
|
3124522
|
909926 |
Phoma wasabiae CBS 120119 |
118260
|
9730653
|
909896 |
Phoma wasabiae CBS 120120 |
118260
|
9730653
|
909931 |
Plectophomella visci CBS 122783 |
565430
|
3166158
|
909958 |
Pyrenochaeta cava CBS 257.68 |
|
|
909942 |
Pyrenochaeta dolichi IMI 217261 |
|
3185421
|
909951 |
Pyrenochaeta dolichi IMI 217262 |
|
3185421
|
909905 |
Pyrenochaeta lycopersici CBS 267.59 |
285811
|
3215392
|
909880 |
Pyrenochaeta nobilis CBS 407.76 |
390895
|
3144002
|
909932 |
Pyrenochaetopsis leptospora CBS 101635 |
|
|
909957 |
Pyrenochaetopsis pratorum CBS 286.93 |
|
|
909879 |
Pyrenochaetopsis pratorum CBS 445.81 |
|
|