@ARTICLE{TreeBASE2Ref27116,
author = {Allison K. Miller and Alexander M. Kerr and Gustav Paulay and Mike Reich and Nerida G. Wilson and Jose I. Carvajal and Greg W Rouse},
title = {Molecular phylogeny of extant Holothuroidea (Echinodermata)},
year = {2017},
keywords = {Holothuroidea, Sea cucumbers, Phylogeny, Nomenclature, Molecular clock},
doi = {},
url = {http://dx.doi.org/10.1016/j.ympev.2017.02.014},
pmid = {},
journal = {Molecular Phylogenetics and Evolution},
volume = {111},
number = {},
pages = {110--131},
abstract = {Sea cucumbers (Holothuroidea) are a morphologically diverse, ecologically important, and economically valued clade of echinoderms; however, the understanding of the overall systematics of the group remains controversial. Here, we present a phylogeny of extant Holothuroidea assessed with maximum parsimony, maximum likelihood, and Bayesian approaches using approximately 4.3 kb of mt- (COI, 16S, 12S) and nDNA (H3, 18S, 28S) sequences from 82 holothuroid terminals representing 23 of the 27 widely- accepted family-ranked taxa. Currently five holothuroid taxa of ordinal rank are accepted. We find that three of the five orders are non-monophyletic, and we revise the taxonomy of the groups accordingly. Apodida is sister to the rest of Holothuroidea, here considered Actinopoda. Within Actinopoda, Elasipodida in part is sister to the remaining Actinopoda. This latter clade, comprising holothuroids with respiratory trees, is now called Pneumonophora. The traditional Aspidochirotida is paraphyletic, with representatives from three orders (Molpadida, Dendrochirotida, and Elasipodida in part) nested within. Therefore, we discontinue the use of Aspidochirotida and instead erect Holothuriida as the sister group to the remaining Pneumonophora, here termed Neoholothuriida. We found four well-supported major clades in Neoholothuriida: Dendrochirotida, Molpadida and two new clades, Synallactida and Persiculida. The mapping of traditionally-used morphological characters in holothuroid systematics onto the phylogeny revealed marked homoplasy in most characters demonstrating that further taxonomic revision of Holothuroidea is required. Two time-tree analyses, one based on calibrations for uncontrover- sial crown group dates for Eleutherozoa, Echinozoa and Holothuroidea and another using these calibra- tions plus four more from within Holothuroidea, showed major discrepancies, suggesting that fossils of Holothuroidea may need reassessment in terms of placing these forms with existing crown clades.}
}
Taxa for tree 103782 of Study 20885
Citation title:
"Molecular phylogeny of extant Holothuroidea (Echinodermata)".
Study name:
"Molecular phylogeny of extant Holothuroidea (Echinodermata)".
This study is part of submission 20885
(Status: Published).
Taxa
Return to complete tree view
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
2774362 |
Abyssocucumis abyssorum E5610 |
|
|
2774342 |
Acaudina molpadioides MOLAF0220 |
545769
|
6739568
|
2774278 |
Actinopyga varians |
|
|
2774382 |
Afrocucumis africana GU038 |
206689
|
2765558
|
2774343 |
Amperima robusta MOLN116 |
|
|
2774383 |
Apostichopus californicus GB |
|
|
2774356 |
Apostichopus parvimensis SIO2 |
|
|
2774281 |
Aslia pygmaea |
|
|
2774372 |
Astichopus multifidus UF3985 |
571820
|
2765472
|
2774392 |
Bathyplotes sp. 1 E5111 |
|
|
2774340 |
Bathyplotes sp. 2 S20496 |
|
|
2774359 |
Benthogone abstrusa MOLAF0378 |
|
|
2774336 |
Bohadschia koellikeri RA661 |
|
|
2774380 |
Chiridota albatrossii Complex_1_E5611 |
|
|
2774376 |
Chiridota albatrossii Complex_2_E5612 |
|
|
2774386 |
Chiridota laevis E5602 |
36321
|
2765523
|
2774302 |
Chiridota rigida |
|
|
2774239 |
Colochirus robustus |
|
|
2774387 |
Crucella scotiae 1 E5296 |
|
|
2774320 |
Crucella scotiae 2 VMA05 |
|
|
2774253 |
Cucumaria miniata |
28833
|
2765416
|
2774377 |
Deima validum AMK9 |
|
|
2774360 |
Echinocucumis cf. hispida S20758 |
|
|
2774348 |
Echinocucumis hispida MOLN168 |
|
|
2774378 |
Enypniastes eximia NW3 |
|
|
2774371 |
Euapta tahitiensis CHK067 |
|
|
2774337 |
Euthyonidiella huwi S20863 |
|
|
2774341 |
Gephyrothuria alcocki MOLN032 |
|
|
2774324 |
Heteromolpadia tridens MOLAF0228 |
|
|
2774388 |
Heterothyone alba NW5 |
|
|
2774349 |
Holothuria hilla GU047 |
566290
|
5516134
|
2774300 |
Holothuria leucospilota |
206669
|
5435153
|
2774361 |
Isostichopus badionotus UF4703 |
571814
|
5470994
|
2774332 |
Labidodemas cf pertinax NOAA1407 |
|
|
2774325 |
Leptosynapta clarki MBLsup |
|
|
2774346 |
Lissothuria nutriens E6675 |
|
|
2774384 |
Massinium magnum PNG120875 |
|
|
2774381 |
Mesothuria oktaknemus UF9746 |
|
|
2774330 |
Molpadia arenicola SIO1 |
7698
|
4829656
|
2774318 |
Molpadia musculus complex |
|
|
2774347 |
Molpadiodemas involutus NIWA49857 |
|
|
2774304 |
Molpadiodemas villosus |
|
|
2774327 |
Myriotrochus antarcticus MOLAF0805 |
|
|
2774368 |
Myriotrochus sp. MOLN139 |
|
|
2774344 |
Oneirophanta setigera UF9706 |
|
|
2774375 |
Orphnurgus glaber MOLAF0372 |
|
|
2774358 |
Pachythyone rubra E6676 |
|
|
2774366 |
Paelopatides sp. 1 E4365 |
|
|
2774345 |
Paelopatides sp. 2 E5609 |
|
|
2774338 |
Pannychia cf. moseleyi E5614 |
|
|
2774350 |
Pannychia moseleyi E4625 |
396330
|
2765485
|
2774370 |
Paracaudina chilensis BCOW1 |
7700
|
2765537
|
2774334 |
Paracucumis turricata VMA06 |
|
|
2774319 |
Paradota sp. E5604 |
|
|
2774390 |
Parastichopus tremulus UF4863 |
|
|
2774351 |
Paroriza prouhoi AMK8 |
|
|
2774315 |
Patiria miniata |
46514
|
2764969
|
2774321 |
Pearsonothuria graeffei RA011 |
240141
|
5532908
|
2774391 |
Peniagone diaphana AMK3 |
|
|
2774374 |
Peniagone sp. E5608 |
|
|
2774328 |
Pentactella leonina S20193 |
|
|
2774352 |
Pentactella sp. S20682 |
|
|
2774365 |
Pentamera calcigera E5613 |
|
|
2774326 |
Phyrella mookei UF10336 |
|
|
2774353 |
Placothuria squamata NW1 |
|
|
2774379 |
Protelpidia cf murrayi E5110 |
|
|
2774389 |
Pseudostichopus sp. 1 S21014 |
|
|
2774373 |
Pseudostichopus sp. 2 S21020 |
|
|
2774331 |
Psolidium dorsipes S20868 |
|
|
2774322 |
Psolidium whittakeri E5136 |
|
|
2774357 |
Psycheotrephes exigua MOLN104 |
|
|
2774335 |
Psychropotes longicauda E4074 |
55639
|
5593852
|
2774367 |
Rhipidothuria racovitzai MOLP166 |
|
|
2774369 |
Sclerodactyla briareus GulfSp |
|
|
2774355 |
Sigmodota contorta E5135 |
|
|
2774385 |
Stichopus chloronotus GU1401 |
240144
|
5473434
|
2774333 |
Stichopus vastus CHK135 |
574475
|
6123367
|
2774286 |
Strongylocentrotus purpuratus |
7668
|
2765318
|
2774339 |
Synallactes sp. E5607 |
|
|
2774363 |
Thelenota anax CHK131 |
574476
|
6412816
|
2774354 |
Thyone sp. PNG121030 |
|
|
2774329 |
Thyonella gemmata GulfSp |
|
|
2774364 |
Ypsilothuria cf. bitentaculata E4760 |
|
|
2774323 |
Zygothuria oxysclera BFGU0226 |
|
|