@ARTICLE{TreeBASE2Ref14890,
author = {Jutta Buschbom and Daniel Barker},
title = {Evolutionary History of Vegetative Reproduction in Porpidia s.l. (Lichen-forming Ascomycota)},
year = {2006},
keywords = {},
doi = {10.1080/10635150600697465},
url = {},
pmid = {},
journal = {Systematic Biology},
volume = {55},
number = {3},
pages = {471--484},
abstract = {The evolutionary history of gains and losses of vegetative reproductive propagules (soredia) in Porpidia s.l., a group of lichen-forming ascomycetes, was clarified using Bayesian Markov chain Monte Carlo (MCMC) approaches to monophyly tests and a combined MCMC and maximum likelihood approach to ancestral character state reconstructions. The MCMC framework provided confidence estimates for the reconstructions of relationships and ancestral character states, which formed the basis for tests of evolutionary hypotheses. Monophyly tests rejected all hypotheses that predicted any clustering of reproductive modes in extant taxa. In addition, a nearest-neighbor statistic could not reject the hypothesis that the vegetative reproductive mode is randomly distributed throughout the group. These results show that transitions between presence and absence of the vegetative reproductive mode within Porpidia s.l. occurred several times and independently of each other. Likelihood reconstructions of ancestral character states at selected nodes suggest that - contrary to previous thought - the ancestor to Porpidia s.l. already possessed the vegetative reproductive mode. Furthermore, transition rates are reconstructed asymmetrically with the vegetative reproductive mode being gained at a much lower rate than it is lost. A cautious note has to be added, since a simulation study showed that the ancestral character state reconstructions were highly dependent on taxon sampling. However, our central conclusions, particularly the higher rate of change from vegetative reproductive mode present to absent than vice-versa within Porpidia s.l., were found to be broadly independent of taxon sampling.}
}
Taxa for tree 4606 of Study 1533
Citation title:
"Evolutionary History of Vegetative Reproduction in Porpidia s.l. (Lichen-forming Ascomycota)".
This study was previously identified under the legacy study ID S1478
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
30606 |
Amygdalaria consentiens |
273077
|
1447517
|
30705 |
Amygdalaria elegantior |
273078
|
3045664
|
30658 |
Amygdalaria panaeola |
273079
|
3045666
|
30596 |
Bellemerea alpina |
170002
|
3871727
|
30597 |
Cecidonia umbonella |
273046
|
3047824
|
30674 |
Cecidonia xenophana |
273047
|
3047825
|
30677 |
Immersaria usbekica |
273086
|
3040822
|
30700 |
Lecidea atrobrunnea |
273118
|
3249979
|
30688 |
Lecidea confluens |
262919
|
3250146
|
171505 |
Lecidea fuscoatra |
88632
|
3250361
|
30702 |
Lecidea lapicida var. swartzioidea |
137680
|
10247100
|
30668 |
Lecidea tesselata |
262918
|
3251297
|
30697 |
Porpidia albocaerulescens asex |
168922
|
3024513
|
30694 |
Porpidia albocaerulescens sex |
168922
|
3024513
|
30680 |
Porpidia austroshetlandica |
273094
|
3024514
|
30593 |
Porpidia carlottiana |
273093
|
3048872
|
30678 |
Porpidia cinereoatra |
273095
|
3229836
|
30605 |
Porpidia contraponenda |
262917
|
3023522
|
4607 |
Porpidia crustulata |
40597
|
3024516
|
30664 |
Porpidia diversa |
273096
|
3048873
|
30600 |
Porpidia flavocoerulescens |
273097
|
10247089
|
30640 |
Porpidia glaucophaea |
273098
|
3024517
|
30711 |
Porpidia grisea |
273099
|
3048875
|
30670 |
Porpidia macrocarpa |
262916
|
3024519
|
30715 |
Porpidia melinodes |
273101
|
3232188
|
30698 |
Porpidia ochrolemma |
273103
|
3262291
|
30659 |
Porpidia soredizodes |
273104
|
1452948
|
30725 |
Porpidia sp1 |
40596
|
2561073
|
30625 |
Porpidia sp2 |
40596
|
2561073
|
30684 |
Porpidia sp3 |
40596
|
2561073
|
30696 |
Porpidia speirea |
273108
|
3034954
|
30701 |
Porpidia stephanodes |
273109
|
3024522
|
30611 |
Porpidia superba |
273110
|
3024523
|
30626 |
Porpidia tahawasiana |
273111
|
3048870
|
30650 |
Porpidia tuberculosa |
273112
|
3024524
|
171620 |
Porpidia zeoroides |
273113
|
3023523
|
30663 |
Stenhammarella turgida |
273070
|
3221884
|
30654 |
Stephanocyclos henssenianus |
273115
|
3038818
|
30724 |
simulated Immersaria 1 |
|
|
30598 |
simulated Immersaria 2 |
|
|
30720 |
simulated Immersaria 3 |
|
|
30657 |
simulated Immersaria 4 |
|
|
30690 |
simulated Immersaria 5 |
|
|
30616 |
simulated Lecidea 1 |
|
|
30686 |
simulated Lecidea 10 |
|
|
30607 |
simulated Lecidea 11 |
|
|
30707 |
simulated Lecidea 12 |
|
|
30613 |
simulated Lecidea 13 |
|
|
30629 |
simulated Lecidea 14 |
|
|
30602 |
simulated Lecidea 15 |
|
|
30604 |
simulated Lecidea 16 |
|
|
30649 |
simulated Lecidea 17 |
|
|
30718 |
simulated Lecidea 18 |
|
|
30722 |
simulated Lecidea 19 |
|
|
30687 |
simulated Lecidea 2 |
|
|
30610 |
simulated Lecidea 20 |
|
|
30726 |
simulated Lecidea 21 |
|
|
30699 |
simulated Lecidea 22 |
|
|
30714 |
simulated Lecidea 23 |
|
|
30603 |
simulated Lecidea 24 |
|
|
30639 |
simulated Lecidea 25 |
|
|
30644 |
simulated Lecidea 26 |
|
|
30599 |
simulated Lecidea 27 |
|
|
30704 |
simulated Lecidea 28 |
|
|
30622 |
simulated Lecidea 29 |
|
|
30594 |
simulated Lecidea 3 |
|
|
30691 |
simulated Lecidea 30 |
|
|
30666 |
simulated Lecidea 31 |
|
|
30636 |
simulated Lecidea 32 |
|
|
30637 |
simulated Lecidea 33 |
|
|
30643 |
simulated Lecidea 34 |
|
|
30631 |
simulated Lecidea 35 |
|
|
30671 |
simulated Lecidea 36 |
|
|
30628 |
simulated Lecidea 37 |
|
|
30667 |
simulated Lecidea 38 |
|
|
30719 |
simulated Lecidea 39 |
|
|
30703 |
simulated Lecidea 4 |
|
|
30710 |
simulated Lecidea 40 |
|
|
30662 |
simulated Lecidea 41 |
|
|
30638 |
simulated Lecidea 42 |
|
|
30661 |
simulated Lecidea 43 |
|
|
30627 |
simulated Lecidea 44 |
|
|
30665 |
simulated Lecidea 45 |
|
|
30709 |
simulated Lecidea 46 |
|
|
30673 |
simulated Lecidea 47 |
|
|
30642 |
simulated Lecidea 48 |
|
|
30706 |
simulated Lecidea 49 |
|
|
30693 |
simulated Lecidea 5 |
|
|
30630 |
simulated Lecidea 50 |
|
|
30716 |
simulated Lecidea 51 |
|
|
30618 |
simulated Lecidea 52 |
|
|
30695 |
simulated Lecidea 53 |
|
|
30655 |
simulated Lecidea 54 |
|
|
30721 |
simulated Lecidea 55 |
|
|
30646 |
simulated Lecidea 56 |
|
|
30712 |
simulated Lecidea 57 |
|
|
30621 |
simulated Lecidea 58 |
|
|
30708 |
simulated Lecidea 59 |
|
|
30648 |
simulated Lecidea 6 |
|
|
30651 |
simulated Lecidea 60 |
|
|
30608 |
simulated Lecidea 61 |
|
|
30676 |
simulated Lecidea 62 |
|
|
30681 |
simulated Lecidea 63 |
|
|
30717 |
simulated Lecidea 64 |
|
|
30713 |
simulated Lecidea 65 |
|
|
30723 |
simulated Lecidea 66 |
|
|
30619 |
simulated Lecidea 67 |
|
|
30679 |
simulated Lecidea 68 |
|
|
30656 |
simulated Lecidea 69 |
|
|
30601 |
simulated Lecidea 7 |
|
|
30645 |
simulated Lecidea 70 |
|
|
30669 |
simulated Lecidea 71 |
|
|
30689 |
simulated Lecidea 72 |
|
|
30683 |
simulated Lecidea 73 |
|
|
30615 |
simulated Lecidea 74 |
|
|
30632 |
simulated Lecidea 75 |
|
|
30620 |
simulated Lecidea 76 |
|
|
30595 |
simulated Lecidea 77 |
|
|
30635 |
simulated Lecidea 78 |
|
|
30609 |
simulated Lecidea 79 |
|
|
30617 |
simulated Lecidea 8 |
|
|
30675 |
simulated Lecidea 80 |
|
|
30660 |
simulated Lecidea 81 |
|
|
30623 |
simulated Lecidea 82 |
|
|
30685 |
simulated Lecidea 83 |
|
|
30612 |
simulated Lecidea 84 |
|
|
30682 |
simulated Lecidea 85 |
|
|
30652 |
simulated Lecidea 86 |
|
|
30634 |
simulated Lecidea 87 |
|
|
30614 |
simulated Lecidea 88 |
|
|
30647 |
simulated Lecidea 89 |
|
|
30653 |
simulated Lecidea 9 |
|
|
30672 |
simulated Lecidea 90 |
|
|
30633 |
simulated Lecidea 91 |
|
|
30641 |
simulated Lecidea 92 |
|
|
30624 |
simulated Lecidea 93 |
|
|
30692 |
simulated Lecidea 94 |
|
|