@ARTICLE{TreeBASE2Ref20764,
author = {Jonathan Hwang and Qi Zhao and Zhu-Liang Yang and Zheng Wang and Jeffrey P. Townsend},
title = {Phylogeny and secondary structure of ITS sequences from annotated collections and environmental samples validate Helvella and unearth the ecological diversification of saddle fungi.},
year = {2014},
keywords = {Helvella, ectomycorrhizal, taxonomy, diversity, ecology},
doi = {},
url = {http://},
pmid = {},
journal = {Fungal Diversity},
volume = {},
number = {},
pages = {},
abstract = {Species of the Saddle fungi Helvella (Helvellaceae, Pezizomycotina) are morphologically well defined and have been intensively studied to reveal their taxonomy and derive a classification. While some other Helvella are ectomycorrhizal fungi, ecological roles of Helvella species as saprotrophs or mycorrhiza have been controversial. We applied SAT? to build an inclusive ITS alignment for annotated Helvella species and their related environmental ITS sequences and analyzed phylogenetic informativeness of ITS1, ITS2, and 5.8S regions using PhyDesgin. We demonstrated that phylogenetic informativeness of ITS1 was higher than that of ITS2 for recent divergences, but dropped more abruptly for deeper relationships. Consistent with previous studies, the analysis suggested high homoplasy for key morphologies in Helvella. Thus, morphology-based groupings of the genus are unlikely to reflect the true evolutionary history. Inclusion of environmental samples into the ITS phylogeny provided strong evidence that ectomycorrhizal association has appeared in several clades within Helvella, and diversified to adapt to different hosts and geographic conditions. However, similar conclusions could not be drawn regarding saprotrophic life styles in other Helvella species, and few environmental sequences from root samples was found in three clades that host herbaria collections of diverse Helvella species. No Helvella ITS sequences have been recovered from studies examining diverse soil samples. Illuminating the evolution of saprotrophic life style within Helvella requires expanded metagenomic investigation of plant and soil samples.}
}
Taxa for matrix 12991 of Study 12787
Citation title:
"Phylogeny and secondary structure of ITS sequences from annotated collections and environmental samples validate Helvella and unearth the ecological diversification of saddle fungi.".
Study name:
"Phylogeny and secondary structure of ITS sequences from annotated collections and environmental samples validate Helvella and unearth the ecological diversification of saddle fungi.".
This study is part of submission 12787
(Status: Published).
Taxa
Return to matrix row view
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
804057 |
Gyromitra infula QFB9249 GQ304944 |
273506
|
3034625
|
804050 |
Gyromitra infula ZQ8263 FJ859347 |
273506
|
3034625
|
804071 |
Gyromitra sphaerospora QFB3131 GQ304943 |
661103
|
3133326
|
804076 |
Helvella KWT1 AJ544210 |
|
|
804059 |
Helvella QZ 2009a FJ859338 |
|
|
804078 |
Helvella QZ 2009a ZQ7219 FJ859336 |
|
|
804074 |
Helvella QZ 2009a ZQ8220 FJ859337 |
|
|
804070 |
Helvella QZ 2009a ZQ8242 FJ859335 |
|
|
804068 |
Helvella SOC902 FJ235143 |
|
|
804077 |
Helvella ZQ8296 FJ859346 |
|
|
804039 |
Helvella acetabulum SOC1181 FJ235151 |
|
3034256
|
804061 |
Helvella albella G802 FJ859343 |
330893
|
3141832
|
804062 |
Helvella albella ZQ822 FJ859342 |
330893
|
3141832
|
804053 |
Helvella atra G869 FJ859339 |
80252
|
1449947
|
804067 |
Helvella chinensis AF046220 |
78321
|
3022165
|
804072 |
Helvella compressa DQ491496 |
265119
|
3194590
|
804045 |
Helvella corium AF046226 |
78322
|
3263070
|
804048 |
Helvella crassitunicata P099i EU697243 |
|
3194592
|
804058 |
Helvella crassitunicata Voucher OSC 66892 EU834203 |
|
3194592
|
804087 |
Helvella crassitunicata Voucher OSC 72014 EU834199 |
|
3194592
|
804080 |
Helvella crassitunicata Voucher OSC 74669 EU834200 |
|
3194592
|
804051 |
Helvella crispa ZQ8164 FJ859345 |
315228
|
1449953
|
804086 |
Helvella crispa ZQ8292 FJ859344 |
315228
|
1449953
|
804052 |
Helvella cupuliformis AF046224 |
78323
|
3209714
|
804046 |
Helvella dovrensis AF046223 |
78324
|
3229723
|
804040 |
Helvella elastica AF335455 |
155154
|
3109634
|
804060 |
Helvella elastica F164 FJ859341 |
155154
|
3109634
|
804047 |
Helvella elastica ZQ8297 FJ859340 |
155154
|
3109634
|
804069 |
Helvella lacunosa AJ544211 |
44625
|
3058787
|
804065 |
Helvella macropus AF046222 |
78325
|
3134462
|
804064 |
Helvella maculata Voucher OSC 72027 EU834201 |
527474
|
3371483
|
804066 |
Helvella maculata p118i EU669212 |
527474
|
3371483
|
804082 |
Helvella rivularis AF064595 |
91948
|
3028961
|
804043 |
Helvella solitaria AF046221 |
78326
|
3263075
|
804079 |
Helvella terrestris AF046219 |
61497
|
3293654
|
804042 |
Morchella elata GQ228477 |
39930
|
3113669
|
804049 |
Morchella spongiola GQ228476 |
62755
|
3072556
|
804075 |
Uncultured Helvella EMB1 3C GU183983 |
|
|
804084 |
Uncultured Helvella QL062 HM105544 |
|
|
804056 |
Uncultured ectomycorrhiza 666G EF655691 |
|
|
804044 |
Uncultured ectomycorrhiza 855 EU498735 |
|
|
804041 |
Uncultured ectomycorrhiza B2CE4 EF417794 |
|
|
804055 |
Uncultured ectomycorrhiza EDn6 FJ789603 |
|
|
804073 |
Uncultured ectomycorrhiza L8CA5 EF417822 |
|
|
804063 |
Uncultured ectomycorrhiza OTU28 GQ221639 |
|
|
804081 |
Uncultured ectomycorrhiza bg3c DQ974834 |
|
|
804085 |
Uncultured ectomycorrhiza isolate L783 Hel2 AJ968669 |
|
|
804088 |
Uncultured ectomycorrhiza isolate P11 AJ969435 |
|
|
804054 |
Uncultured mycorrhizal fungus 721 FJ897187 |
|
|
804083 |
Wynnella silvicola AF064596 |
44627
|
3218174
|