@ARTICLE{TreeBASE2Ref27509,
author = {Simon E Coppard and H A Lessios},
title = {Phylogeography of the sand dollar genus Encope: implications regarding the Central American Isthmus and rates of molecular evolution},
year = {2017},
keywords = {Encope, Mellitidae, speciation, Isthmus of Panama, Pliocene closure, ecophenotypic variation, slow rate of mtDNA evolution},
doi = {},
url = {http://},
pmid = {},
journal = {Scientific Reports},
volume = {},
number = {},
pages = {},
abstract = {Vicariant events have been widely used to calibrate rates of molecular evolution, the completion of the Central American Isthmus more extensively than any other. Recent studies have claimed that rather than the generally accepted date of ~3 million years ago (Ma), the Isthmus was effectively complete by the middle Miocene, 13 Ma. We present a fossil calibrated phylogeny of the new world sand dollar genus Encope, based on one nuclear and four mitochondrial genes, calibrated with fossils at multiple nodes. Present day distributions of Encope are likely the result of multiple range contractions and extinction events. Most species are now endemic to a single region, but one widely distributed species in each ocean is composed of morphotypes previously described as separate species. The most recent separation between eastern Pacific and Caribbean extant clades occurred at 4.90 Ma, indicating that the Isthmus of Panama allowed genetic exchange until the Pliocene. The rate of evolution of mitochondrial genes in Encope has been ten times slower than in the closely related genera Mellita and Lanthonia. This large difference in rates suggests that splits between eastern Pacific and Caribbean biota, dated on the assumption of a ?universal? mitochondrial DNA clock are not valid.}
}
Taxa for tree 106359 of Study 21395
Citation title:
"Phylogeography of the sand dollar genus Encope: implications regarding the Central American Isthmus and rates of molecular evolution".
Study name:
"Phylogeography of the sand dollar genus Encope: implications regarding the Central American Isthmus and rates of molecular evolution".
This study is part of submission 21395
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
2862382 |
Encope aberrans EAFP1 |
39301
|
594170
|
2862375 |
Encope aberrans EAFP2 |
39301
|
594170
|
2862408 |
Encope aberrans EAFP3 |
39301
|
594170
|
2862383 |
Encope aberrans EAFP4 |
39301
|
594170
|
2862392 |
Encope aberrans EAFP5 |
39301
|
594170
|
2862386 |
Encope aberrans EAFP6 |
39301
|
594170
|
2862458 |
Encope aberrans EAGM1 |
39301
|
594170
|
2862411 |
Encope aberrans EAGM2 |
39301
|
594170
|
2862421 |
Encope aberrans EAGM3 |
39301
|
594170
|
2862464 |
Encope borealis EBPPM1 |
|
|
2862394 |
Encope borealis EBPPM2 |
|
|
2862370 |
Encope borealis EBPPM3 |
|
|
2862448 |
Encope borealis EBPPM4 |
|
|
2862449 |
Encope borealis EBPPM5 |
|
|
2862390 |
Encope borealis EBPPM6 |
|
|
2862474 |
Encope californica ECLP1 |
|
|
2862468 |
Encope californica ECLP2 |
|
|
2862420 |
Encope californica ECLP3 |
|
|
2862379 |
Encope californica ECLP4 |
|
|
2862472 |
Encope californica ECLP5_6 |
|
|
2862416 |
Encope cocosi ECOCR1 |
|
|
2862477 |
Encope ecuadorensis EESEE1 |
|
|
2862425 |
Encope emarginata EEPBB1_4 |
|
|
2862428 |
Encope emarginata EEPBB2_3_5_8 |
|
|
2862434 |
Encope emarginata EEPBB6 |
|
|
2862446 |
Encope emarginata EEPBB7 |
|
|
2862413 |
Encope emarginata EEPLP1 |
|
|
2862403 |
Encope emarginata EEPLP4 |
|
|
2862473 |
Encope emarginata EERB1_EEPLP2 |
|
|
2862372 |
Encope emarginata EERB2 |
|
|
2862478 |
Encope emarginata EESB1_EEPLP3 |
|
|
2862385 |
Encope emarginata EESB2_3 |
|
|
2862415 |
Encope emarginata EESMC5 |
|
|
2862437 |
Encope fragilis EFCR1 |
|
|
2862380 |
Encope fragilis EFCR2 |
|
|
2862452 |
Encope fragilis EFCR3 |
|
|
2862429 |
Encope fragilis EFCR4 |
|
|
2862440 |
Encope galapagensis EGIF1 |
|
|
2862482 |
Encope galapagensis EGIF2 |
|
|
2862378 |
Encope galapagensis EGII1_2 |
|
|
2862461 |
Encope galapagensis EGISFl1 |
|
|
2862445 |
Encope galapagensis EGISFl2 |
|
|
2862469 |
Encope galapagensis EGISFl3 |
|
|
2862419 |
Encope grandis EGBA1_4 |
|
|
2862381 |
Encope grandis EGBA2 |
|
|
2862400 |
Encope grandis EGBA3 |
|
|
2862447 |
Encope insularis EIIS1 |
|
|
2862436 |
Encope insularis EIIS2 |
|
|
2862479 |
Encope insularis EIIS3 |
|
|
2862409 |
Encope irregularis EIRH1 |
|
|
2862431 |
Encope laevis ELNH1 |
|
|
2862398 |
Encope michelini EMFP1 |
273753
|
2765341
|
2862405 |
Encope michelini EMFP2 |
273753
|
2765341
|
2862457 |
Encope michelini EMFP3 |
273753
|
2765341
|
2862441 |
Encope michelini EMFP4 |
273753
|
2765341
|
2862407 |
Encope michelini EMFP5 |
273753
|
2765341
|
2862384 |
Encope michelini EMMKF1_4 |
273753
|
2765341
|
2862410 |
Encope michelini EMMKF2 |
273753
|
2765341
|
2862412 |
Encope michelini EMMKF3_5 |
273753
|
2765341
|
2862423 |
Encope michelini EMSLF1 |
273753
|
2765341
|
2862444 |
Encope michelini EMSLF2 |
273753
|
2765341
|
2862438 |
Encope michelini EMSLF3 |
273753
|
2765341
|
2862470 |
Encope micropora EMAZ1_4_EMPV1 |
|
|
2862376 |
Encope micropora EMAZ3_5_EMVP3 |
|
|
2862422 |
Encope micropora EMCR1 |
|
|
2862463 |
Encope micropora EMPV4_EMAZ2 |
|
|
2862414 |
Encope micropora EMRP1_5 |
|
|
2862399 |
Encope micropora EMRP2_EMSJ2_7 |
|
|
2862391 |
Encope micropora EMRP2_EMVP2 |
|
|
2862396 |
Encope micropora EMRP3_EMSJ8 |
|
|
2862374 |
Encope micropora EMSJ3_EMRP4 |
|
|
2862456 |
Encope micropora EMSJ4_ETRP1_3 |
|
|
2862377 |
Encope micropora EMSJ5_EMST6_8 |
|
|
2862442 |
Encope micropora EMST1_4_7 |
|
|
2862387 |
Encope micropora EMST3_5_EMSJ3 |
|
|
2862366 |
Encope micropora Esp1 |
|
|
2862439 |
Encope micropora Esp2 |
|
|
2862462 |
Encope micropora Esp3 |
|
|
2862371 |
Encope micropora Esp4_6 |
|
|
2862393 |
Encope micropora Esp5 |
|
|
2862365 |
Encope oblonga EEV1 |
|
|
2862455 |
Encope oblonga EEV2 |
|
|
2862368 |
Encope perspectiva EPCR1_3 |
|
|
2862426 |
Encope perspectiva EPCR2 |
|
|
2862418 |
Encope perspectiva EPLPM1 |
|
|
2862389 |
Encope perspectiva EPSJP1 |
|
|
2862430 |
Encope subclausa ESPLP1_2 |
|
|
2862369 |
Encope subclausa ESPLP3 |
|
|
2862401 |
Encope tetrapora ETRP2_EMSJ1 |
|
|
2862460 |
Encope valenciennesii EVM1 |
|
|
2862480 |
Encope wetmorei EWBM1_3_EWMM3 |
|
|
2862373 |
Encope wetmorei EWBM2_EWMM1 |
|
|
2862459 |
Encope wetmorei EWBM4 |
|
|
2862363 |
Encope wetmorei EWBM5_7 |
|
|
2862362 |
Encope wetmorei EWBM6_8 |
|
|
2862427 |
Encope wetmorei EWBPE1 |
|
|
2862481 |
Encope wetmorei EWBPE2_3 |
|
|
2862395 |
Encope wetmorei EWEC1_3 |
|
|
2862471 |
Encope wetmorei EWEC2 |
|
|
2862367 |
Encope wetmorei EWLLP1 |
|
|
2862453 |
Encope wetmorei EWLLP2 |
|
|
2862466 |
Encope wetmorei EWLLP3 |
|
|
2862388 |
Encope wetmorei EWLLP4 |
|
|
2862432 |
Encope wetmorei EWLLP5_ELLP1 |
|
|
2862404 |
Encope wetmorei EWMM2 |
|
|
2862435 |
Lanthonia longifissa LLGP7 |
|
|
2862406 |
Lanthonia longifissa LLGP9 |
|
|
2862417 |
Lanthonia longifissa LLMM1 |
|
|
2862476 |
Lanthonia longifissa LLMM2 |
|
|
2862450 |
Lanthonia longifissa LLPCP3 |
|
|
2862397 |
Leodia seiesperforata LSP1 |
|
|
2862454 |
Mellita quinquiesperforata MQBTP1 |
|
|
2862433 |
Mellita quinquiesperforata MQPP1 |
|
|
2862443 |
Mellita quinquiesperforata MQPP4 |
|
|
2862467 |
Mellita quinquiesperforata MQSBP1 |
|
|
2862402 |
Mellita quinquiesperforata MQSBP2 |
|
|
2862364 |
Mellitella stokesii MSPVP1 |
|
|
2862475 |
Mellitella stokesii MSPVP2 |
|
|
2862465 |
Mellitella stokesii MSPVP3 |
|
|
2862424 |
Mellitella stokesii MSRP1 |
|
|
2862451 |
Mellitella stokesii MSRP2 |
|
|