@ARTICLE{TreeBASE2Ref19603,
author = {Angelique Corthals and Antonius Koller and Dwight Martin and Robert Rieger and Emily Chen and Mario Bernaski and Gabriella Recagno and Liliana M Davalos},
title = {Detecting the Immune System Response of a 500 Year-old Inca Mummy},
year = {2012},
keywords = {forensic DNA, immune system, proteomics, SH test.},
doi = {10.1371/journal.pone.0041244},
url = {http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0041244},
pmid = {},
journal = {PLoS One},
volume = {7},
number = {7},
pages = {e41244},
abstract = {Disease detection in historical samples currently relies on DNA extraction and amplification, or immunoassays. These techniques only establish pathogen presence rather than active disease. We report the first use of shotgun proteomics to detect the protein expression profile of buccal swabs and cloth samples from two 500-year-old Andean mummies. The profile of one of the mummies is consistent with immune system response to severe pulmonary bacterial infection at the time of death. Presence of a probably pathogenic Mycobacterium sp. in one buccal swab was confirmed by DNA amplification, sequencing, and phylogenetic analyses. Our study provides positive evidence of active pathogenic infection in an ancient sample for the first time. The protocol introduced here is less susceptible to contamination than DNA-based or immunoassay-based studies. In scarce forensic samples, shotgun proteomics narrows the range of pathogens to detect using DNA assays, reducing cost. This analytical technique can be broadly applied for detecting infection in ancient samples to answer questions on the historical ecology of specific pathogens, as well as in medico-legal cases when active pathogenic infection is suspected.}
}
Taxa for tree 52818 of Study 11376
Citation title:
"Detecting the Immune System Response of a 500 Year-old Inca Mummy".
Study name:
"Detecting the Immune System Response of a 500 Year-old Inca Mummy".
This study is part of submission 11366
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
786915 |
Acidothermus cellulolyticus 11B |
28049
|
2553597
|
786912 |
Amycolatopsis mediterranei U32 chromosome |
33910
|
2553931
|
786940 |
Arthrobacter chlorophenolicus A6 |
85085
|
2554067
|
786983 |
Arthrobacter sp FB24 1 |
|
|
786999 |
Bifidobacterium adolescentis ATCC 15703 |
367928
|
10300261
|
786994 |
Bifidobacterium bifidum PRL2010 |
1681
|
2554435
|
786972 |
Bifidobacterium bifidum S17 |
1681
|
2554435
|
786971 |
Bifidobacterium breve DSM 20213 B breve1 0 1 |
1685
|
2554437
|
786970 |
Bifidobacterium dentium ATCC 27679 |
1689
|
2554443
|
786992 |
Bifidobacterium dentium Bd1 |
1689
|
2554443
|
786973 |
Bifidobacterium longum DJO10A |
216816
|
2554451
|
786993 |
Bifidobacterium longum NCC2705 |
216816
|
2554451
|
786989 |
Bifidobacterium longum infantis 157F |
|
|
787003 |
Bifidobacterium longum infantis ATCC 15697 |
|
|
787000 |
Bifidobacterium longum infantis ATCC 55813 |
|
|
786990 |
Bifidobacterium longum longum BBMN68 |
|
|
786987 |
Bifidobacterium longum longum JCM 1217 |
|
|
786982 |
Bifidobacterium longum longum JDM301 chromo |
|
|
786957 |
Bifidobacterium sp. 41 42 |
|
|
786922 |
Catenulispora acidiphila DSM 44928 |
479433
|
|
787001 |
Cellulomonas flavigena DSM 20109 |
446466
|
|
786998 |
Clavibacter michiganensis michiganensis NCP |
443906
|
2554901
|
786988 |
Clavibacter michiganensis sepedonicus |
31964
|
2554903
|
786951 |
Corynebacterium efficiens YS314 |
152794
|
3017344
|
786979 |
Corynebacterium genitalium ATCC 33030 |
585529
|
|
786976 |
Corynebacterium glucuronolyticum ATCC 51866 |
548478
|
|
786969 |
Corynebacterium matruchotii ATCC 14266 |
553207
|
|
786961 |
Corynebacterium urealyticum DSM 7109 |
504474
|
|
786937 |
Frankia alni ACN14a |
1859
|
2555839
|
786995 |
Geodermatophilus obscurus DSM 43160 |
526225
|
|
786986 |
Gordonia bronchialis DSM 43247 |
526226
|
|
786985 |
Intrasporangium calvum DSM 43043 |
53358
|
2556273
|
786913 |
Kineococcus radiotolerans SRS30216 |
131568
|
3017449
|
786964 |
Kocuria rhizophila DC2201 |
72000
|
2556355
|
786960 |
Kytococcus sedentarius DSM 20547 chromosome |
1276
|
2556372
|
786966 |
Micrococcus luteus NCTC 2665 |
465515
|
|
786975 |
Micromonospora aurantiaca ATCC 27029 |
644283
|
|
787002 |
Micromonospora sp L5 |
|
|
786959 |
Mycobacterium avium 104 |
1764
|
229828
|
786968 |
Mycobacterium avium subsp paratuberculosis K10 |
|
|
786949 |
Mycobacterium bovis AF2122 97 |
1765
|
226600
|
786905 |
Mycobacterium bovis BCG str Pasteur 1173P2 |
1765
|
226600
|
786928 |
Mycobacterium bovis BCG str Tokyo 172 |
1765
|
226600
|
786927 |
Mycobacterium gilvum PYRGCK |
1804
|
3865890
|
786901 |
Mycobacterium smegmatis str MC2 155 |
|
|
786956 |
Mycobacterium sp JLS |
|
|
786936 |
Mycobacterium sp KMS |
|
|
786950 |
Mycobacterium sp MCS |
|
|
786981 |
Mycobacterium sp Spyr1 |
|
|
786920 |
Mycobacterium sp. 45 46 |
|
|
786962 |
Mycobacterium tuberculosis CDC1551 |
1773
|
3865940
|
786933 |
Mycobacterium tuberculosis F11 |
1773
|
3865940
|
786947 |
Mycobacterium tuberculosis H37Ra |
1773
|
3865940
|
786954 |
Mycobacterium tuberculosis H37Rv |
1773
|
3865940
|
786934 |
Mycobacterium tuberculosis KZN 1435 |
478434
|
|
786923 |
Mycobacterium vanbaalenii PYR1 |
110539
|
3915782
|
786980 |
Nakamurella multipartita DSM 44233 |
479431
|
|
786932 |
Nocardia farcinica IFM 10152 |
247156
|
10232414
|
786925 |
Nocardioides sp JS614 |
|
|
786939 |
Rhodococcus equi 103S |
43767
|
2558250
|
786991 |
Rhodococcus equi ATCC 33707 |
525370
|
|
786898 |
Rhodococcus jostii RHA1 |
132919
|
2558254
|
786916 |
Rhodococcus opacus B4 |
37919
|
2558260
|
786978 |
Saccharopolyspora erythraea NRRL 2338 |
405948
|
10324424
|
786952 |
Salinispora arenicola CNS205 |
391967
|
5966136
|
786938 |
Salinispora tropica CNB440 |
168695
|
5966134
|
786984 |
Segniliparus rotundus DSM 44985 |
640132
|
|
786919 |
Streptomyces avermitilis MA4680 |
33903
|
3017769
|
786997 |
Streptomyces coelicolor A3 2 |
1902
|
2558979
|
786904 |
Streptomyces scabiei 87 22 |
1930
|
2559281
|
786996 |
Streptosporangium roseum DSM 43021 |
479432
|
|
786929 |
Thermobifida fusca YX |
269800
|
10245364
|
786977 |
Thermobispora bispora DSM 43833 |
469371
|
|
786974 |
Thermomonospora curvata DSM 43183 |
471852
|
|