@ARTICLE{TreeBASE2Ref15872,
author = {Sara B. Hoot and W. Carl Taylor and Nancy Napier},
title = {Phylogeny and biogeography of Isoetes (Isoetaceae) based on nuclear and chloroplast DNA sequence data},
year = {2006},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {Systematic Botany},
volume = {},
number = {},
pages = {},
abstract = {Despite its ancient origins, worldwide distribution, and adaptation to diverse habitats, Iso?tes species have a highly conserved morphology, making it difficult to resolve phylogenetic relationships using morphological characters. In this paper, we report the results from various analyses (maximum parsimony, maximum likelihood, and Bayesian inference) for Iso?tes species from around the world based on nucleotide sequences from the nuclear internal transcribed spacer (ITS) and chloroplast atpB/rbcL intergenic spacer regions. The trees resulting from our analyses of the combined data contain six major well supported clades (bootstrap > 90%, posterior probabilities = 1.00): A clade with possible Gondwanan affinities (I. australis, I. coromandelina, I. panamensis, I. cubana, I. jamaicensis); a South African clade (I. capensis, I. toximontana, I. stellenbossiensis, I. stephansenii); a largely Northern Hemisphere clade (I. nuttallii, I. orcuttii, I. minima, I. dixitei, I. abyssinica, I. olympica, I. longissima, I. velata); an Asian/Australasian clade (I. drummondii, I. gunnii, I. pusilla, I. kirkii, I. muelleri, I. taiwanensis, I. japonica, I. yunguiensis, I. habbemensis), a Mediterannean clade (I. histrix and I. setacea), and a poorly resolved clade consisting of 12 new world species (American species complex). Our results are compared to past classifications and various biogeographical scenarios are explored.}
}
Taxa for matrix 52448 of Study 1550

Citation title:
"Phylogeny and biogeography of Isoetes (Isoetaceae) based on nuclear and chloroplast DNA sequence data".

This study was previously identified under the legacy study ID S1495
(Status: Published).
Taxa
Return to matrix row view
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
3888443 |
Allium cepa |
4679
|
2662403
|
3888437 |
Anguloa rukerii |
|
|
3888412 |
Anthogonium gracile |
159935
|
5965118
|
3888458 |
Aphyllorchis montana |
666370
|
5778013
|
3888419 |
Apostasia odorata |
280455
|
5978822
|
3888454 |
Arundina graminifolia |
78703
|
2664287
|
3888426 |
Bletilla formosana |
466243
|
1883808
|
3888481 |
Brachycorythis henryi |
|
|
3888455 |
Bulbophyllum helenae |
|
|
3888466 |
Calanthe labrosa |
|
|
3888467 |
Calanthe mannii |
|
|
3888460 |
Cephalanthera humilis |
|
|
3888453 |
Ceratostylis himalaica |
|
|
3888474 |
Cheirostylis yunnanensis |
|
|
3888444 |
Chrysoglossum ornatum |
|
|
3888450 |
Cleisostoma scolopendrifolium |
331189
|
5983944
|
3888414 |
Coelogyne fimbriata |
141728
|
5784097
|
3888447 |
Collabium formosanum |
|
|
3888476 |
Corybas taliensis |
|
|
3888478 |
Corymborkis veratrifolia |
256354
|
3491654
|
3888472 |
Cremastra appendiculata |
459596
|
5893138
|
3888461 |
Cryptochilus luteus |
|
|
3888465 |
Cryptostylis arachnites |
256355
|
1883898
|
3888436 |
Cymbidium macrorhizon |
|
|
3888440 |
Cypripedilum lichiangense |
|
|
3888409 |
Cypripedium henryi |
476167
|
5990271
|
3888441 |
Cypripedium tibeticum |
|
|
3888433 |
Dactylorhiza viride |
230577
|
9351041
|
3888475 |
Danxiaorchis singchii |
|
|
3888424 |
Dendrobium hainanense |
467197
|
5784200
|
3888483 |
Dendrobium moniliforme |
142614
|
3491777
|
3888470 |
Epigeneium amplum |
234050
|
1883995
|
3888416 |
Epipactis mairei |
|
8401069
|
3888484 |
Epipactis royleana |
|
8590279
|
3888415 |
Epipogium aphyllum |
449980
|
5768929
|
3888445 |
Eria amica |
|
|
3888442 |
Eriodes barbata |
|
|
3888479 |
Eulophia nuda |
78774
|
5780070
|
3888410 |
Galeola lindleyana |
|
|
3888446 |
Gastrodia elata |
91201
|
5769072
|
3888423 |
Gennaria griffthii |
|
|
3888428 |
Habenaria glaucifolia |
|
|
3888431 |
Hancockia uniflora |
|
|
3888430 |
Hemipilia cordifolia |
|
|
3888429 |
Holcoglossum amesianum |
536147
|
8916132
|
3888473 |
Holcoglossum himalaicum |
|
|
3888435 |
Holcoglossum quasipinifolium |
|
|
3888439 |
Hsenhsua chrysea |
|
|
3888451 |
Liparis bootanensis |
|
|
3888482 |
Malaxis monophyllos |
426910
|
2663116
|
3888425 |
Maxillaria variablis |
|
|
3888432 |
Neottia alternifolia |
|
|
3888471 |
Neottia cordata |
669720
|
8914163
|
3888456 |
Nervilia aragoana |
152892
|
5775606
|
3888413 |
Neuwiedia veratrifolia |
38223
|
5779947
|
3888420 |
Pelatantheria rivesii |
|
|
3888422 |
Phaius flavus |
679630
|
3508988
|
3888485 |
Phalaenopsis marriottiana var parishii |
|
|
3888468 |
Phalaenopsis zhejiangensis |
|
|
3888457 |
Phoenix dactylifera |
42345
|
2662206
|
3888448 |
Pholidota recurva |
|
|
3888452 |
Platanthera minor |
|
|
3888469 |
Pleione bulbocodioides |
141752
|
5760434
|
3888434 |
Plocoglottis bokorensis |
|
|
3888417 |
Pogonia yunnanensis |
|
|
3888459 |
Polystachya concreta |
38197
|
2663216
|
3888463 |
Risleya atropurpurea |
|
|
3888418 |
Shizhenia pingulata |
|
|
3888421 |
Sobralia macrantha |
78844
|
5855581
|
3888438 |
Spiranthes sinensis |
117406
|
3493712
|
3888480 |
Stanhopea graveolens |
|
|
3888411 |
Thaia saprophytica |
667022
|
9284545
|
3888477 |
Trichotosia pulvinata |
|
|
3888449 |
Tropidia angulosa |
|
|
3888464 |
Vanda brunnea |
536165
|
5759928
|
3888462 |
Vanilla planifolia |
51239
|
2663163
|