@ARTICLE{TreeBASE2Ref22346,
author = {Gunjan Sharma and Anil Kumar Pinnaka and Belle Damodara Shenoy},
title = {Resolving the Colletotrichum siamense species complex using ApMat marker},
year = {2014},
keywords = {Ascomycota; Pathogenicity testing; Phylogeny; Tropical crops; Apn2/MAT IGS},
doi = {10.1007/s13225-014-0312-7},
url = {http://},
pmid = {},
journal = {Fungal Diversity},
volume = {},
number = {},
pages = {1--18},
abstract = {Colletotrichum gloeosporioides sensu lato has been associated with anthracnose in diverse commercial crops. It is now established that C. gloeosporioides sensu lato comprises 33 phylogenetic species and C. gloeosporioides sensu stricto is not a common pathogen of tropical fruits. In this study, we investigated the phylogenetic relationships of 85 Colletotrichum isolates associated with select tropical fruits and flowering plants from India. In the ApMat marker analysis, the 85 isolates clustered with 7 known Colletotrichum species (C. aotearoa, C. dianesei, C. endomangiferae, C. musae, C. siamense, C. theobromicola, Glomerella cingulata f. sp. camelliae) and six novel lineages. One of the novel lineages is described and illustrated in this paper as Colletotrichum communis sp. nov., while new-host pathogen associations for C. aotearoa, C. endomangiferae, C. dianesei and C. theobromicola are reported from India. Out of the 85 isolates analysed in this paper, 73 isolates clustered within the C. siamense species complex, indicating that C. siamense species complex, not C. gloeosporioides sensu stricto, is common on tropical fruits. In comparison with act, cal, gapdh, ITS and tub2 gene markers, we recommend the use of the ApMat marker for accurate identification of cryptic species within the C. siamense species complex. We believe that the ApMat marker, in combination with one or two similar ?phylogenetically superior? gene markers, is a better candidate for species-level classification of fungi that were traditionally identified as ?Colletotrichum gloeosporioides?.}
}
Taxa for tree 86527 of Study 14671
Citation title:
"Resolving the Colletotrichum siamense species complex using ApMat marker".
Study name:
"Resolving the Colletotrichum siamense species complex using ApMat marker".
This study is part of submission 14671
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
1793047 |
Colletotrichum aenigma ICMP 18608 |
|
|
1793054 |
Colletotrichum aeschynomenes ICMP 17673 |
|
|
1793061 |
Colletotrichum alatae ICMP 17919 |
|
|
1793094 |
Colletotrichum alienum ICMP 12071 |
|
|
1793042 |
Colletotrichum alotearoa ICMP 18537 |
|
|
1793092 |
Colletotrichum asianum ICMP 18580 |
|
|
1793074 |
Colletotrichum clidemiae ICMP 18658 |
|
|
1793087 |
Colletotrichum cordylinicola ICMP 18579 |
|
|
1793064 |
Colletotrichum dianesei MFLU 1300058 |
|
|
1793076 |
Colletotrichum endophytica MFLUCC13-0418 |
|
|
1793070 |
Colletotrichum fructicola G cingulata minor ICMP 17921 |
|
|
1793088 |
Colletotrichum fructicola ICMP 18581 |
|
|
1793069 |
Colletotrichum fructicola ignotum ICMP 18646 |
|
|
1793046 |
Colletotrichum gloeosporioides ICMP 17821 |
|
|
1793107 |
Colletotrichum grevilleae CPC15481 |
|
|
1793037 |
Colletotrichum horii ICMP 10492 |
|
|
1793083 |
Colletotrichum kahawae ciggaro G cingulata migrans ICMP 17922 |
|
|
1793057 |
Colletotrichum kahawae ciggaro G rufomaculans vaccinii ICMP 19122 |
|
|
1793097 |
Colletotrichum kahawae ciggaro ICMP 18539 |
|
|
1793091 |
Colletotrichum kahawae kahawae ICMP 17816 |
|
|
1793052 |
Colletotrichum murrayae GZAAS5.09506 |
|
3079426
|
1793059 |
Colletotrichum musae ICMP 19119 |
5464
|
3177225
|
1793056 |
Colletotrichum nupharicola ICMP 18187 |
|
3279515
|
1793077 |
Colletotrichum proteae CPC14859 |
|
|
1793065 |
Colletotrichum psidii ICMP 19120 |
|
3161973
|
1793062 |
Colletotrichum queenslandicum ICMP 1778 |
|
|
1793038 |
Colletotrichum salsolae ICMP 19051 |
|
|
1793090 |
Colletotrichum siamense ICMP 18578 |
|
|
1793093 |
Colletotrichum siamense hymenocallidis ICMP 18642 |
|
|
1793098 |
Colletotrichum siamense jasminisambac ICMP 19118 |
|
|
1793053 |
Colletotrichum sp. BDS17 |
34409
|
9730169
|
1793081 |
Colletotrichum sp. BDS18a |
34409
|
9730169
|
1793078 |
Colletotrichum sp. GB07 |
34409
|
9730169
|
1793063 |
Colletotrichum sp. GBM2 |
34409
|
9730169
|
1793035 |
Colletotrichum sp. GBM3 |
34409
|
9730169
|
1793048 |
Colletotrichum sp. GC01 |
34409
|
9730169
|
1793073 |
Colletotrichum sp. GN01 |
34409
|
9730169
|
1793086 |
Colletotrichum sp. GO01 |
34409
|
9730169
|
1793105 |
Colletotrichum sp. GO04 |
34409
|
9730169
|
1793040 |
Colletotrichum sp. GS01 |
34409
|
9730169
|
1793099 |
Colletotrichum sp. GS06 |
34409
|
9730169
|
1793082 |
Colletotrichum sp. GS14 |
34409
|
9730169
|
1793079 |
Colletotrichum sp. GS17 |
34409
|
9730169
|
1793060 |
Colletotrichum sp. GS28 |
34409
|
9730169
|
1793039 |
Colletotrichum sp. GUFCC15502 |
34409
|
9730169
|
1793072 |
Colletotrichum sp. IMTF736 |
34409
|
9730169
|
1793055 |
Colletotrichum sp. IMTF976 |
34409
|
9730169
|
1793049 |
Colletotrichum sp. ITC 4981 |
|
|
1793100 |
Colletotrichum sp. ITC 5123 |
|
|
1793103 |
Colletotrichum sp. ITC 6066 |
|
|
1793036 |
Colletotrichum sp. ITC 6153 |
|
|
1793101 |
Colletotrichum sp. ITC 6159 |
|
|
1793067 |
Colletotrichum sp. ITC 6160 |
|
|
1793051 |
Colletotrichum sp. ITC 6161 |
|
|
1793095 |
Colletotrichum sp. ITC 6164 |
|
|
1793068 |
Colletotrichum sp. ITC 6165 |
|
|
1793066 |
Colletotrichum sp. ITC 6336 |
|
|
1793050 |
Colletotrichum sp. MTC 4626 |
|
|
1793104 |
Colletotrichum sp. NFCCI 1737 |
|
|
1793045 |
Colletotrichum sp. NFCCI 1925 |
|
|
1793058 |
Colletotrichum sp. TB01 |
34409
|
9730169
|
1793102 |
Colletotrichum sp. TP01 |
34409
|
9730169
|
1793043 |
Colletotrichum sp. TP02 |
34409
|
9730169
|
1793085 |
Colletotrichum sp. TP05 |
34409
|
9730169
|
1793106 |
Colletotrichum syzygicola DNCL021 |
|
|
1793089 |
Colletotrichum theobromicola ICMP 18649 |
|
3069209
|
1793041 |
Colletotrichum theobromicola fragariae ICMP 17927 |
|
|
1793096 |
Colletotrichum theobromicola stylosanthis ICMP 17957 |
|
|
1793075 |
Colletotrichum ti ICMP 4832 |
|
|
1793084 |
Colletotrichum tropicale ICMP 18653 |
|
|
1793080 |
Colletotrichum viniferum GZAAS5.08601 |
|
|
1793071 |
Colletotrichum xanthorrhoeae ICMP 17903 |
0
|
3282852
|
1793044 |
Glomerella cingulata camelliae ICMP 18542 |
|
3916565
|