@ARTICLE{TreeBASE2Ref18754,
author = {Jorge Manuel Santos and Viviana G. Correia and Alan John Lander Phillips},
title = {Primers for mating-type diagnosis in Diaporthe and Phomopsis: their use in teleomorph induction in vitro and biological species definition.},
year = {2010},
keywords = {},
doi = {10.1016/j.funbio.2010.01.007},
url = {},
pmid = {},
journal = {Fungal Biology},
volume = {114},
number = {2-3},
pages = {255--270},
abstract = {Sexual reproduction in ascomycete fungi is governed by the mating-type (MAT) locus. The MAT loci of Diaporthe and its Phomopsis anamorphs differ in only one gene: MAT1-1-1 in mating-type MAT1-1 and MAT1-2-1 in mating-type MAT1-2. In order to diagnose mating-types in Diaporthe and Phomopsis and evaluate their usefulness in teleomorph induction in vitro and biological species delimitation, we designed primers that amplify part of the MAT1-1-1 and MAT1-2-1 genes. MAT phylogenies were generated and compared with ITS and EF1-? phylograms. Species recognized in the EF1-? phylogeny corresponded directly with those determined in the MAT phylogenies. ITS was shown to be highly variable resulting in a large number of phylogenetic species that were discordant with MAT and EF1-? species. Mating experiments were conducted to evaluate the existence of reproductive barriers between some isolates, and their anamorphic morphologies were compared. The primers proved to be useful in the mating-type diagnosis of isolates, selection of compatible mating pairs, and in the assessment of biological species boundaries.}
}
Taxa for tree 6894 of Study 10264

Citation title:
"Primers for mating-type diagnosis in Diaporthe and Phomopsis: their use in teleomorph induction in vitro and biological species definition.".

This study was previously identified under the legacy study ID S2623
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
273681 |
Diaporthe G type 930811 14 |
|
|
268169 |
Diaporthe G type 930811 17 |
|
|
273685 |
Diaporthe W type P Pt 16 |
|
|
268180 |
Diaporthe W type P Pt 19 |
|
|
268123 |
Diaporthe alleghaniensis CBS 495 72 |
0
|
3207850
|
272687 |
Diaporthe ambigua CBS 114015 |
73123
|
3097777
|
272697 |
Diaporthe ambigua CBS 123210 |
73123
|
3097777
|
272688 |
Diaporthe ambigua CBS 123211 |
73123
|
3097777
|
273682 |
Diaporthe ambigua DQ286242 |
73123
|
3097777
|
273693 |
Diaporthe angelicae CBS 111592 |
230357
|
3280025
|
272696 |
Diaporthe angelicae Ph C032 1 |
230357
|
3280025
|
272692 |
Diaporthe angelicae Ph C068 2 |
230357
|
3280025
|
273677 |
Diaporthe angelicae Ph C094 2 |
230357
|
3280025
|
273694 |
Diaporthe angelicae Ph C121 1 |
230357
|
3280025
|
273684 |
Diaporthe aspalathi DQ286249 |
626713
|
|
273687 |
Diaporthe aspalathi DQ286250 |
626713
|
|
268131 |
Diaporthe crotalariae CBS 162 33 |
0
|
3153451
|
273703 |
Diaporthe cynaroidis EU552093 |
531879
|
|
273698 |
Diaporthe helianthi CBS 592 81 |
158607
|
3915928
|
268083 |
Diaporthe hickoriae CBS 145 26 |
0
|
3146695
|
272691 |
Diaporthe lusitanicae CBS 123212 |
573504
|
|
268069 |
Diaporthe lusitanicae CBS 123213 |
573504
|
|
268185 |
Diaporthe lusitanicae Di C001 7 |
573504
|
|
272698 |
Diaporthe lusitanicae Ph C170 1 |
|
|
268095 |
Diaporthe melonis CBS 507 78 |
222581
|
3192710
|
273679 |
Diaporthe neotheicola CBS 123208 |
573505
|
|
268152 |
Diaporthe neotheicola CBS 123209 |
573505
|
|
268112 |
Diaporthe neotheicola Di C004 1 |
573505
|
|
268127 |
Diaporthe neotheicola Di C004 6 |
573505
|
|
268108 |
Diaporthe neotheicola Ph C182 1 |
573505
|
|
268142 |
Diaporthe neotheicola Ph C190 1 |
573505
|
|
268074 |
Diaporthe neotheicola Ph C195 1 |
573505
|
|
268162 |
Diaporthe neotheicola Ph C196 1 |
573505
|
|
273678 |
Diaporthe perjuncta CBS 109745 |
186170
|
3073885
|
273688 |
Diaporthe phaseolorum var meridionalis AF398893 |
87642
|
3922419
|
268181 |
Diaporthe sp Di C005 1 |
|
|
268188 |
Diaporthe sp Di C005 2 |
|
|
268170 |
Diaporthe sp Di C005 3 |
|
|
268079 |
Diaporthe sp Di C005 8 |
|
|
268139 |
Diaporthe sp Di C007 |
|
|
268101 |
Diaporthe stewartii CBS 193 36 |
0
|
3164146
|
268086 |
Diaporthe strumella var longispora CBS 194 36 |
0
|
3919293
|
273686 |
Diaporthe vaccinii CBS 160 32 |
105482
|
3165744
|
268147 |
Diaporthe viticola 111 |
265709
|
3131318
|
272695 |
Diaporthe viticola CBS 113201 |
265709
|
3131318
|
268159 |
Diaporthe viticola Di C006 2 |
265709
|
3131318
|
273676 |
Leucostoma niveum DQ862035 |
105484
|
3147509
|
272694 |
Phomopsis amygdali 11A |
83182
|
3039577
|
272686 |
Phomopsis amygdali 16A |
83182
|
3039577
|
268178 |
Phomopsis cotoneastri CBS 439 82 |
0
|
3198688
|
268082 |
Phomopsis cotoneastri Di C005 10 |
0
|
3198688
|
268071 |
Phomopsis cotoneastri Di C005 4 |
0
|
3198688
|
268099 |
Phomopsis cotoneastri Di C005 5 |
0
|
3198688
|
268114 |
Phomopsis cotoneastri Di C005 6 |
0
|
3198688
|
268141 |
Phomopsis cotoneastri Di C005 7 |
0
|
3198688
|
268175 |
Phomopsis cotoneastri Di C005 9 |
0
|
3198688
|
273696 |
Phomopsis cuppatea AY339354 |
|
|
273680 |
Phomopsis cuppatea DQ286258 |
|
|
268110 |
Phomopsis dauci CBS 315 49 |
0
|
3184013
|
268072 |
Phomopsis phoenicicola CBS 161 64 |
0
|
3121651
|
273692 |
Phomopsis sclerotioides CBS 296 67 |
193001
|
3036497
|
268062 |
Phomopsis sp 151 |
|
|
268133 |
Phomopsis sp 152 |
|
|
268187 |
Phomopsis sp 439B4 |
|
|
273702 |
Phomopsis sp 9 DQ286259 |
|
|
273700 |
Phomopsis sp AY745054 |
|
|
273689 |
Phomopsis sp EU259179 |
|
|
273691 |
Phomopsis sp FJ389009 |
|
|
268144 |
Phomopsis sp Ph AC002 |
|
|
268153 |
Phomopsis sp Ph AC003 |
|
|
268135 |
Phomopsis sp Ph C169 1 |
|
|
268098 |
Phomopsis sp Ph C173 1 |
|
|
268105 |
Phomopsis sp Ph C174 1 |
|
|
268064 |
Phomopsis sp Ph C180 1 |
|
|
268097 |
Phomopsis sp Ph C188 1 |
|
|
268171 |
Phomopsis sp Ph C189 1 |
|
|
268111 |
Phomopsis sp Ph C192 1 |
|
|
268165 |
Phomopsis sp Ph C194 1 |
|
|
273695 |
Phomopsis theicola DQ286260 |
359331
|
3284573
|
268117 |
Phomopsis viticola 114 |
83180
|
3132874
|
268096 |
Phomopsis viticola 115 |
83180
|
3132874
|
273701 |
Phomopsis viticola AY745081 |
83180
|
3132874
|
273690 |
Phomopsis viticola AY745082 |
83180
|
3132874
|
273697 |
Phomopsis viticola AY745083 |
83180
|
3132874
|
273683 |
Phomopsis viticola CBS114016 |
83180
|
3132874
|
273699 |
Valsa ambiens DQ862041 |
148335
|
1454999
|