@ARTICLE{TreeBASE2Ref17984,
author = {Hermann Voglmayr and A. Riethmuller and M. Gker and M. Weifl and Franz Oberwinkler},
title = {Phylogenetic relationships of Plasmopara, Bremia and other genera of downy mildew fungi with pyriform haustoria based on Bayesian analysis of partial LSU rDNA sequence data.},
year = {2004},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {Molecular Ecology},
volume = {108},
number = {},
pages = {},
abstract = {Bayesian and maximum parsimony phylogenetic analyses of 92 collections of the genera Basidiophora, Bremia, Paraperonospora, Phytophthora and Plasmopara were performed using nuclear large subunit ribosomal DNA sequences containing the D1 and D2 regions. In the Bayesian tree, two main clades were apparent: one clade containing Plasmopara pygmaea s. l., Pl. sphaerosperma, Basidiophora, Bremia and Paraperonospora, and a clade containing all other Plasmopara species. Plasmopara is shown to be polyphyletic, and Pl. sphaerosperma is transferred to a new genus, Protobremia, for which also the oospore characteristics are described. Within the core Plasmopara clade, all collections originating from the same host family except from Asteraceae and Geraniaceae formed monophyletic clades; however, higher-level phylogenetic relationships lack significant branch support. A sister group relationship of Pl. sphaerosperma with Bremia lactucae is highly supported. Within Bremia lactucae s. l., three distinct clades are evident, which only partly conform to the published host specificity groups. All species of the genera Basidiophora, Bremia, Paraperonospora and Plasmopara included in the present study were investigated for haustorial morphology, and all had ellipsoid to pyriform haustoria, which are regarded as a diagnostic synapomorphy of the whole clade. Aspects of coevolution and cospeciation within the downy mildews with ellipsoid to pyriform haustoria are briefly discussed.}
}
Taxa for matrix 25533 of Study 1194

Citation title:
"Phylogenetic relationships of Plasmopara, Bremia and other genera of downy mildew fungi with pyriform haustoria based on Bayesian analysis of partial LSU rDNA sequence data.".

This study was previously identified under the legacy study ID S1102
(Status: Published).
Taxa
Return to matrix row view
| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 1694597 |
Asterochloris cf glomerata |
|
|
| 1694601 |
Asterochloris echinata |
|
|
| 1694609 |
Asterochloris erici |
|
|
| 1694602 |
Asterochloris excentrica |
|
|
| 1694604 |
Asterochloris friedlii |
|
|
| 1694605 |
Asterochloris gaertneri |
|
|
| 1694610 |
Asterochloris glomerata IB 349 |
|
|
| 1694587 |
Asterochloris glomerata IB 355 |
|
|
| 1694612 |
Asterochloris irregularis Peksa 999 and 1 additional sequence |
|
|
| 1694588 |
Asterochloris italiana |
|
|
| 1694614 |
Asterochloris leprarii |
|
|
| 1693810 |
Asterochloris magna |
|
|
| 1694592 |
Asterochloris phycobiontica |
477178
|
3320080
|
| 1694611 |
Asterochloris sp CG572 |
|
|
| 1694589 |
Asterochloris sp LIsn |
|
|
| 1694590 |
Asterochloris woessiae |
|
|
| 1693825 |
Botryococcus sp |
|
|
| 1693811 |
Elliptochloris bilobata |
381761
|
3533007
|
| 1694593 |
Myrmecia biatorellae and 2 additional sequences |
|
|
| 1694594 |
Myrmecia israelensis |
415195
|
3309716
|
| 1694613 |
Myrmecia sp CG62 |
|
|
| 1694598 |
Myrmecia sp OB14 461 |
|
|
| 1694608 |
Myrmecia sp OB4791 |
|
|
| 1694600 |
Trebouxia aggregata and Trebouxia arboricola |
|
|
| 1694603 |
Trebouxia angustilobata |
664442
|
|
| 1694599 |
Trebouxia anticipata and Trebouxia gelatinosa |
|
|
| 1694586 |
Trebouxia australis |
664443
|
|
| 1694595 |
Trebouxia crenulata |
300846
|
3530702
|
| 1694606 |
Trebouxia decolorans |
300845
|
3533226
|
| 1694596 |
Trebouxia flava |
134273
|
5991786
|
| 1693821 |
Trebouxia jamesii |
53267
|
3527735
|
| 1694607 |
Trebouxia potteri |
134274
|
3527736
|
| 1694591 |
Trebouxia showmanii |
134275
|
3527737
|
| 1694585 |
Trebouxia simplex |
664445
|
3533232
|