@ARTICLE{TreeBASE2Ref20834,
author = {Akihiko Kinoshita and Hiromi Sasaki and Kazuhide Nara},
title = {Multiple origins of sequestrate basidiomes within Entoloma inferred from molecular phylogenetic analyses},
year = {2012},
keywords = {Asia, convergent evolution, ectomycorrhizal fungi, false truffles, hypogeous, saprotrophic fungi },
doi = {},
url = {http://www.sciencedirect.com/science/article/pii/S1878614612001699},
pmid = {},
journal = {Fungal Biology},
volume = {116},
number = {12},
pages = {1250--1262},
abstract = {The genus Entoloma comprises diverse trophic modes and basidiome morphologies. Although Entoloma includes some sequestrate species, their origins are not clearly understood in relation to phylogenetic position and trophic status. In this study, we collected 34 sequestrate Entoloma specimens in Japan over a 9-year period. Their identities and phylogenetic positions were determined by molecular analyses using three nuclear loci [internal transcribed spacer (ITS) and large subunit (LSU) regions of rDNA and RNA polymerase II large subunit (rpb2) gene]. Based on species delimitation of 97% sequence matches in the ITS region, which is a suitable region for species-level identification of higher fungi, we identified four sequestrate Entoloma species. Molecular phylogenetic analyses that included all related sequences in the international nucleotide sequence database revealed that the four sequestrate Entoloma species belonged to two major phylogroups. One of the phylogroups was Inocephalus?Cyanula, which is composed only of saprotrophic species. Three of the Japanese sequestrate species, as well as three previously known sequestrate species from other regions, fell into at least two independent clades in this phylogroup, indicating multiple origins of sequestrate forms within this saprotrophic lineage. Another phylogroup, Rhodopoloid, was also shown to include a sequestrate species for the first time. Because the Rhodopolioid phylogroup is composed exclusively of mycorrhizal species (ectomycorrhizal and tuberculate mycorrhizal species), the sequestrate form may also have evolved from a mycorrhizal ancestor. Our results suggest that sequestrate basidiomes have evolved multiple times, irrespective of their trophic status in Entoloma. Finally, based on molecular and morphological characteristics, here we describe two new sequestrate Entoloma species, i.e. E. prismaticum Sasaki, Kinoshita et Nara, sp. nov. and E. hypogaeum Sasaki, Kinoshita et Nara, sp. nov.}
}
Taxa for matrix 14420 of Study 12868

Citation title:
"Multiple origins of sequestrate basidiomes within Entoloma inferred from molecular phylogenetic analyses".

Study name:
"Multiple origins of sequestrate basidiomes within Entoloma inferred from molecular phylogenetic analyses".

This study is part of submission 12868
(Status: Published).
Taxa
Return to matrix row view
| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 822880 |
Clitocybe dealbata |
71875
|
1618160
|
| 822940 |
Clitopilus geminus |
693815
|
|
| 822943 |
Clitopilus popinalis |
693818
|
3133347
|
| 822942 |
Clitopilus prunulus |
71936
|
3133730
|
| 822928 |
Collybia tuberosa |
88288
|
3138626
|
| 822808 |
Entoloma abortivum |
117021
|
3178832
|
| 822931 |
Entoloma albidoquadratum |
684094
|
|
| 822854 |
Entoloma alboumbonatum |
|
3208368
|
| 822917 |
Entoloma alcedicolor |
684095
|
|
| 822831 |
Entoloma alpicola |
181133
|
3028895
|
| 822814 |
Entoloma ameides 1 |
566063
|
3127959
|
| 822815 |
Entoloma ameides 2 |
566063
|
3127959
|
| 822811 |
Entoloma anatinum |
566064
|
1449439
|
| 822859 |
Entoloma aprile 1 |
566065
|
3136283
|
| 822812 |
Entoloma aprile 2 |
566065
|
3136283
|
| 822806 |
Entoloma araneosum |
566066
|
3193344
|
| 822862 |
Entoloma asprellum |
566067
|
3193348
|
| 822839 |
Entoloma asterosporum |
|
|
| 822861 |
Entoloma atrocoeruleum |
566068
|
3046488
|
| 822846 |
Entoloma bloxamii |
181135
|
3121084
|
| 822821 |
Entoloma byssisedum |
566069
|
3178837
|
| 822911 |
Entoloma caccabus |
684096
|
3029393
|
| 822848 |
Entoloma caeruleopolitum 1 |
566070
|
3022815
|
| 822787 |
Entoloma caeruleopolitum 2 |
566070
|
3022815
|
| 822823 |
Entoloma caesiocinctum |
566071
|
3027370
|
| 822868 |
Entoloma calongei |
693833
|
|
| 822883 |
Entoloma canescens |
181136
|
3208389
|
| 822926 |
Entoloma cephalotrichum |
684097
|
3193363
|
| 822829 |
Entoloma cetratum 1 |
566072
|
3193365
|
| 822788 |
Entoloma cetratum 2 |
566072
|
3193365
|
| 822825 |
Entoloma cf.alpicola |
|
|
| 822875 |
Entoloma cf.nigroviolaceum |
|
|
| 822784 |
Entoloma cf.sericeum |
|
|
| 894702 |
Entoloma chalybaeum var.lazulinum1 |
566073
|
1449445
|
| 894701 |
Entoloma chalybaeum var.lazulinum2 |
566073
|
1449445
|
| 822816 |
Entoloma clandestinum |
566074
|
3030004
|
| 822798 |
Entoloma clypeatum |
418785
|
3097619
|
| 822835 |
Entoloma clypeatum f.hybridum |
|
|
| 822916 |
Entoloma cocles |
684098
|
3028653
|
| 822927 |
Entoloma coeruleogracilis 1 |
|
|
| 822910 |
Entoloma coeruleogracilis 2 |
|
|
| 822937 |
Entoloma conferendum |
631146
|
3030005
|
| 822934 |
Entoloma costatum |
684099
|
1618481
|
| 822844 |
Entoloma crassipes |
439022
|
1449448
|
| 822923 |
Entoloma cretaceum |
684100
|
|
| 822796 |
Entoloma cuspidiferum |
566075
|
1449450
|
| 822919 |
Entoloma eulividum |
181137
|
3021534
|
| 822892 |
Entoloma excentricum |
684101
|
3101483
|
| 822886 |
Entoloma flavifolium |
181138
|
3130255
|
| 822879 |
Entoloma gasteromycetoides |
693835
|
|
| 822894 |
Entoloma gelatinosum |
684102
|
3193399
|
| 822920 |
Entoloma griseolazulinum |
684103
|
|
| 822895 |
Entoloma haastii |
181139
|
3208420
|
| 822915 |
Entoloma hebes |
684104
|
3027378
|
| 822885 |
Entoloma hypogaeum |
|
|
| 822888 |
Entoloma incanum |
526942
|
3208425
|
| 822881 |
Entoloma indigoticoumbrinum |
693836
|
|
| 822866 |
Entoloma indoviolaceum |
684105
|
|
| 822850 |
Entoloma infundibuliforme |
|
1449462
|
| 822930 |
Entoloma kermandii |
684106
|
|
| 822932 |
Entoloma lividum |
181140
|
1616564
|
| 822855 |
Entoloma madidum |
512071
|
1640627
|
| 822908 |
Entoloma myrmecophilum |
684107
|
3193435
|
| 822800 |
Entoloma nidorosum |
181141
|
1618093
|
| 822824 |
Entoloma nitidum |
155152
|
3064001
|
| 822909 |
Entoloma odorifer |
181142
|
5967673
|
| 822901 |
Entoloma pallideradicatum |
693845
|
3294017
|
| 822865 |
Entoloma parasiticum |
684108
|
3022525
|
| 822882 |
Entoloma perbloxamii |
693837
|
|
| 822941 |
Entoloma phaeomarginatum |
684109
|
3193458
|
| 822900 |
Entoloma pluteisimilis |
684110
|
|
| 822893 |
Entoloma politum |
684111
|
3032458
|
| 822870 |
Entoloma porphyrescens |
684112
|
3193461
|
| 822903 |
Entoloma prismaticum |
|
|
| 822873 |
Entoloma procerum |
684113
|
3208467
|
| 822899 |
Entoloma prunuloides |
285439
|
3100694
|
| 822929 |
Entoloma pygmaeopapillatum |
684114
|
1449476
|
| 822874 |
Entoloma quadratum |
181143
|
3193473
|
| 822902 |
Entoloma readiae |
693838
|
9731509
|
| 822781 |
Entoloma rhodopolium |
181144
|
1449477
|
| 822887 |
Entoloma sarcitum |
684115
|
3028921
|
| 822921 |
Entoloma saundersii |
627205
|
1618554
|
| 822843 |
Entoloma sepium |
627206
|
3280044
|
| 822905 |
Entoloma sericatum |
684116
|
3123946
|
| 822933 |
Entoloma sericellum |
684117
|
3123723
|
| 822797 |
Entoloma sericeonitidum |
181145
|
3025461
|
| 822944 |
Entoloma sericeum |
155153
|
3105060
|
| 822896 |
Entoloma serrulatum |
684118
|
3208476
|
| 822884 |
Entoloma sinuatum |
285111
|
3122916
|
| 822804 |
Entoloma sinuatum 2 |
285111
|
3122916
|
| 822863 |
Entoloma sinuatum 3 |
285111
|
3122916
|
| 822872 |
Entoloma sordidulum |
684119
|
1449478
|
| 822889 |
Entoloma sp.292 |
|
|
| 822851 |
Entoloma sp.62103 |
|
|
| 822860 |
Entoloma sp.B356 |
|
|
| 822858 |
Entoloma sp.CDW71 |
|
|
| 822822 |
Entoloma sp.EH37 |
|
|
| 822779 |
Entoloma sp.EM677 |
|
|
| 822789 |
Entoloma sp.No242 |
|
|
| 822912 |
Entoloma sp.No243 |
|
|
| 822792 |
Entoloma sp.No244 |
|
|
| 822820 |
Entoloma sp.P219 |
|
|
| 822906 |
Entoloma sp.koniro |
|
|
| 822841 |
Entoloma sp.src742 |
|
|
| 822871 |
Entoloma sphagneti |
693843
|
3148482
|
| 822925 |
Entoloma strictius |
71938
|
3127367
|
| 894703 |
Entoloma strictius var.isabellin |
|
|
| 822935 |
Entoloma tectonicola |
684121
|
|
| 822914 |
Entoloma tjallingiorum |
684122
|
3027387
|
| 822877 |
Entoloma trachyosporum |
684123
|
3193501
|
| 822913 |
Entoloma transmutans |
693840
|
|
| 822904 |
Entoloma turbidum 1 |
230790
|
3116727
|
| 822897 |
Entoloma turbidum 2 |
230790
|
3116727
|
| 822891 |
Entoloma undatum |
181146
|
3193507
|
| 822898 |
Entoloma valdeumbonatum |
684124
|
|
| 822783 |
Entoloma versatile |
591138
|
3193512
|
| 822924 |
Entoloma vezzenaense |
693841
|
3287634
|
| 822890 |
Entoloma vinaceum |
|
1317538
|
| 822936 |
Entoloma violaceovillosum |
684125
|
|
| 822878 |
Entoloma zuccherellii |
693842
|
|
| 822793 |
Inocephalus sp GDb |
|
|
| 822938 |
Lepista ovispora |
684126
|
3031575
|
| 822864 |
Lepista sordida |
123925
|
3180870
|
| 822918 |
Nolanea cetrata |
181157
|
3094262
|
| 822876 |
Nolanea sericea |
158290
|
1618115
|
| 822869 |
Sequestrate Entoloma sp.2 |
|
|
| 822867 |
Sequestrate Entoloma sp.3 |
|
|
| 822853 |
Tricholoma vaccinum |
56470
|
3129289
|
| 822857 |
Uncultured Basidiomycete 274 |
|
|
| 822795 |
Uncultured Basidiomycete B3 9 |
|
|
| 822805 |
Uncultured Basidiomycota man24 |
|
|
| 822856 |
Uncultured Basidiomycota man41 |
|
|
| 822818 |
Uncultured Basidiomycota man6 |
|
|
| 822809 |
Uncultured EMF 16 |
|
|
| 822786 |
Uncultured EMF 919F |
|
|
| 822799 |
Uncultured EMF AK21 |
|
|
| 822794 |
Uncultured EMF EDn4 |
|
|
| 822780 |
Uncultured EMF ENTA |
|
|
| 822845 |
Uncultured EMF Gre |
|
|
| 822807 |
Uncultured EMF Kal |
|
|
| 822847 |
Uncultured EMF M12F |
|
|
| 822838 |
Uncultured EMF M31 |
|
|
| 822810 |
Uncultured EMF P090 |
|
|
| 822826 |
Uncultured EMF SDL67 |
|
|
| 822813 |
Uncultured EMF SR06 |
|
|
| 822803 |
Uncultured EMF TK3 |
|
|
| 822828 |
Uncultured Entoloma 2 277 |
|
|
| 822837 |
Uncultured Entoloma 4Bart |
|
|
| 822817 |
Uncultured Entoloma AB10 |
|
|
| 822776 |
Uncultured Entoloma NHPY25 |
|
|
| 822842 |
Uncultured Entoloma NHPY26 |
|
|
| 822836 |
Uncultured Entoloma RSEM33 |
|
|
| 822790 |
Uncultured Entolomataceae 1S1 |
|
|
| 822834 |
Uncultured Entolomataceae 3058C |
|
|
| 822791 |
Uncultured Entolomataceae D16 |
|
|
| 822827 |
Uncultured Entolomataceae G4p2 |
|
|
| 822782 |
Uncultured Entolomataceae MT44 |
|
|
| 822819 |
Uncultured Mortierella |
|
|
| 822852 |
Uncultured fungus 53 1 |
|
|
| 822840 |
Uncultured fungus HB 1c |
|
|
| 822833 |
Uncultured fungus S77 |
|
|