@ARTICLE{TreeBASE2Ref21275,
author = {Jeffrey M. Lorch and Daniel L. Lindner and Andrea Gargas and Laura K Muller and Andrew M Minnis and David S. Blehert},
title = {A culture-based survey of fungi in soil from bat hibernacula in the eastern United States and its implications for detection of Geomyces destructans, the causal agent of bat white-nose syndrome},
year = {2012},
keywords = {white-nose syndrome, bat, wildlife disease, skin infection, Geomyces},
doi = {},
url = {http://},
pmid = {},
journal = {Mycologia},
volume = {},
number = {},
pages = {},
abstract = {The recent emergence of white-nose syndrome (WNS), a fungal disease causing unprecedented mortality among hibernating bats of eastern North America, has revealed a knowledge gap regarding fungal communities associated with bats and their hibernacula. We used culture-based techniques to investigate the diversity of fungi in soil samples collected from 24 bat hibernacula in the eastern United States. Ribosomal RNA regions (internal transcribed spacer and partial intergenic spacer) were sequenced to preliminarily characterize isolates. Geomyces species were one of the most abundant and diverse groups cultured, representing approximately 33% of all isolates. Geomyces destructans was isolated from soil samples from three hibernacula and many of the cultured Geomyces isolates likely represent undescribed taxa. Further characterization of the diversity of fungi that occur in hibernacula will both facilitate an improved understanding of the ecology of G. destructans within this complex fungal community and provide an opportunity to identify characteristics that differentiate G. destructans from non-pathogenic relatives.}
}
Taxa for matrix 16814 of Study 13306

Citation title:
"A culture-based survey of fungi in soil from bat hibernacula in the eastern United States and its implications for detection of Geomyces destructans, the causal agent of bat white-nose syndrome".

Study name:
"A culture-based survey of fungi in soil from bat hibernacula in the eastern United States and its implications for detection of Geomyces destructans, the causal agent of bat white-nose syndrome".

This study is part of submission 13306
(Status: Published).
Taxa
Return to matrix row view
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
1077675 |
Agaricales sp. 16WV07 |
|
|
1077639 |
Arthroderma sp. 07MA15 |
|
|
1077752 |
Arthroderma sp. 20KY13 |
|
|
1077755 |
Arthrographis sp. 07MA20 |
|
|
1077785 |
Aspergillus sp. 15PA17A |
|
|
1077577 |
Aspergillus sp. 15PA17B |
|
|
1077633 |
Aspergillus sp. 17WV10 |
|
|
1077738 |
Aspergillus sp. 17WV11 |
|
|
1077757 |
Aspergillus sp. 17WV13 |
|
|
1077825 |
Aspergillus sp. 17WV14 |
|
|
1077585 |
Auxarthron sp. 07MA16 |
|
|
1077787 |
Candida albicans JN882321 |
5476
|
4773781
|
1077686 |
Candida sp. 12NJ03 |
|
|
1077812 |
Candida sp. 16WV03B |
|
|
1077756 |
Capnodiales sp. 22MS03 |
|
|
1077590 |
Chrysosporium sp. 14PA12 |
40412
|
9730130
|
1077587 |
Chrysosporium sp. 18VA20 |
40412
|
9730130
|
1077860 |
Chrysosporium sp. 21IN11 |
40412
|
9730130
|
1077654 |
Chrysosporium sp. 21IN12 |
40412
|
9730130
|
1077798 |
Coprinellus sp. 20KY11 |
|
|
1077784 |
Davidiella tassiana CBS121621 EF679363 |
29918
|
4037081
|
1077746 |
Debaryomyces sp. 10NY11 |
|
|
1077629 |
Debaryomyces sp. 21IN03 |
|
|
1077710 |
Dictyosporium sp. 19VA07 |
|
|
1077768 |
Doratomyces sp. 02NH06 |
|
|
1077774 |
Doratomyces sp. 02NH10 |
|
|
1077683 |
Doratomyces sp. 02NH13 |
|
|
1077760 |
Doratomyces sp. 07MA03 |
|
|
1077848 |
Doratomyces sp. 15PA12 |
|
|
1077715 |
Doratomyces sp. 18VA03 |
|
|
1077702 |
Doratomyces sp. 18VA05 |
|
|
1077716 |
Doratomyces sp. 18VA06 |
|
|
1077771 |
Doratomyces sp. 18VA11 |
|
|
1077808 |
Epicoccum sp. 22MS01 |
|
|
1077855 |
Geomyces destructans 07MA10 |
655981
|
|
1077641 |
Geomyces destructans 08CT06 |
655981
|
|
1077708 |
Geomyces destructans 20631 21 EU884921 |
655981
|
|
1077821 |
Geomyces pannorum asperulatus UAMH183 DQ117444 |
64687
|
3033435
|
1077828 |
Geomyces sp. 01NH06 |
|
|
1077688 |
Geomyces sp. 01NH07 |
|
|
1077644 |
Geomyces sp. 01NH08 |
|
|
1077811 |
Geomyces sp. 01NH10 |
|
|
1077857 |
Geomyces sp. 01NH12 |
|
|
1077664 |
Geomyces sp. 02NH05 |
|
|
1077732 |
Geomyces sp. 02NH08 |
|
|
1077640 |
Geomyces sp. 02NH11 |
|
|
1077741 |
Geomyces sp. 02NH14 |
|
|
1077813 |
Geomyces sp. 04NY09 |
|
|
1077651 |
Geomyces sp. 04NY10 |
|
|
1077570 |
Geomyces sp. 04NY11 |
|
|
1077837 |
Geomyces sp. 04NY14 |
|
|
1077613 |
Geomyces sp. 04NY16 |
|
|
1077682 |
Geomyces sp. 04NY17A |
|
|
1077820 |
Geomyces sp. 04NY17B |
|
|
1077696 |
Geomyces sp. 05NY04 |
|
|
1077596 |
Geomyces sp. 05NY05 |
|
|
1077736 |
Geomyces sp. 05NY06 |
|
|
1077747 |
Geomyces sp. 05NY07 |
|
|
1077713 |
Geomyces sp. 05NY08 |
|
|
1077630 |
Geomyces sp. 05NY09 |
|
|
1077661 |
Geomyces sp. 06VT05 |
|
|
1077659 |
Geomyces sp. 06VT12 |
|
|
1077684 |
Geomyces sp. 07MA02 |
|
|
1077601 |
Geomyces sp. 07MA04 |
|
|
1077743 |
Geomyces sp. 07MA07 |
|
|
1077635 |
Geomyces sp. 07MA08 |
|
|
1077782 |
Geomyces sp. 07MA09 |
|
|
1077817 |
Geomyces sp. 07MA14 |
|
|
1077584 |
Geomyces sp. 10NY04 |
|
|
1077856 |
Geomyces sp. 10NY06 |
|
|
1077814 |
Geomyces sp. 10NY07 |
|
|
1077685 |
Geomyces sp. 10NY08 |
|
|
1077727 |
Geomyces sp. 10NY09 |
|
|
1077762 |
Geomyces sp. 10NY10 |
|
|
1077658 |
Geomyces sp. 11MA03 |
|
|
1077662 |
Geomyces sp. 11MA05 |
|
|
1077789 |
Geomyces sp. 11MA07 |
|
|
1077740 |
Geomyces sp. 11MA08 |
|
|
1077612 |
Geomyces sp. 12NJ08 |
|
|
1077692 |
Geomyces sp. 12NJ10 |
|
|
1077777 |
Geomyces sp. 12NJ13 |
|
|
1077765 |
Geomyces sp. 12NJ15 |
|
|
1077795 |
Geomyces sp. 13PA01 |
|
|
1077779 |
Geomyces sp. 14PA05 |
|
|
1077758 |
Geomyces sp. 14PA06 |
|
|
1077581 |
Geomyces sp. 15PA02 |
|
|
1077830 |
Geomyces sp. 15PA05 |
|
|
1077863 |
Geomyces sp. 15PA10A |
|
|
1077827 |
Geomyces sp. 15PA11 |
|
|
1077647 |
Geomyces sp. 16WV05 |
|
|
1077653 |
Geomyces sp. 17WV02 |
|
|
1077573 |
Geomyces sp. 17WV03 |
|
|
1077606 |
Geomyces sp. 17WV04 |
|
|
1077645 |
Geomyces sp. 17WV05 |
|
|
1077602 |
Geomyces sp. 17WV06 |
|
|
1077745 |
Geomyces sp. 17WV09 |
|
|
1077799 |
Geomyces sp. 17WV15 |
|
|
1077737 |
Geomyces sp. 18VA07 |
|
|
1077615 |
Geomyces sp. 18VA08 |
|
|
1077793 |
Geomyces sp. 18VA09 |
|
|
1077809 |
Geomyces sp. 18VA10 |
|
|
1077574 |
Geomyces sp. 18VA12 |
|
|
1077853 |
Geomyces sp. 18VA13 |
|
|
1077818 |
Geomyces sp. 18VA15 |
|
|
1077575 |
Geomyces sp. 18VA16 |
|
|
1077862 |
Geomyces sp. 18VA17 |
|
|
1077670 |
Geomyces sp. 20KY01 |
|
|
1077618 |
Geomyces sp. 20KY02 |
|
|
1077773 |
Geomyces sp. 20KY04 |
|
|
1077833 |
Geomyces sp. 20KY08 |
|
|
1077643 |
Geomyces sp. 20KY10 |
|
|
1077729 |
Geomyces sp. 20KY12 |
|
|
1077650 |
Geomyces sp. 21IN01 |
|
|
1077669 |
Geomyces sp. 21IN05 |
|
|
1077605 |
Geomyces sp. 21IN06 |
|
|
1077810 |
Geomyces sp. 21IN08 |
|
|
1077851 |
Geomyces sp. 21IN10 |
|
|
1077687 |
Geomyces sp. 23WI04 |
|
|
1077652 |
Geomyces sp. 23WI05 |
|
|
1077592 |
Geomyces sp. 23WI06 |
|
|
1077786 |
Geomyces sp. 23WI08 |
|
|
1077725 |
Geomyces sp. 23WI14 |
|
|
1077699 |
Geomyces sp. 24MN03 |
|
|
1077619 |
Geomyces sp. 24MN04 |
|
|
1077822 |
Geomyces sp. 24MN06 |
|
|
1077803 |
Geomyces sp. 24MN09 |
|
|
1077610 |
Geomyces sp. 24MN10 |
|
|
1077582 |
Geomyces sp. 24MN11 |
|
|
1077735 |
Geomyces sp. 24MN13 |
|
|
1077840 |
Geomyces sp. 24MN14 |
|
|
1077845 |
Geomyces sp. 24MN17 |
|
|
1077677 |
Geomyces sp. 24MN18 |
|
|
1077790 |
Geomyces sp. 24MN28 |
|
|
1077797 |
Geomyces sp. 24MN33 |
|
|
1077706 |
Gymnascella sp. 24MN30 |
|
|
1077861 |
Gymnoascoideus sp. 14PA14 |
|
|
1077749 |
Gymnoascoideus sp. 24MN34 |
|
|
1077815 |
Gymnoascus sp. 02NH07 |
|
|
1077636 |
Gymnoascus sp. 12NJ07 |
|
|
1077593 |
Gymnoascus sp. 12NJ14 |
|
|
1077859 |
Gymnoascus sp. 15PA08 |
|
|
1077707 |
Gymnoascus sp. 15PA15 |
|
|
1077796 |
Gymnoascus sp. 18VA04 |
|
|
1077831 |
Gymnoascus sp. 20KY15 |
|
|
1077816 |
Gymnoascus sp. 22MS07 |
|
|
1077637 |
Gymnoascus sp. 22MS08 |
|
|
1077663 |
Gymnoascus sp. 22MS09 |
|
|
1077721 |
Gymnoascus sp. 23WI02 |
|
|
1077781 |
Gymnoascus sp. 23WI13 |
|
|
1077843 |
Hypomyces sp. 15PA19 |
|
|
1077625 |
Isaria sp. 07MA12 |
|
|
1077616 |
Isaria sp. 07MA19 |
|
|
1077761 |
Isaria sp. 13PA02 |
|
|
1077693 |
Isaria sp. 13PA03 |
|
|
1077804 |
Kernia sp. 04NY18 |
|
|
1077672 |
Kernia sp. 12NJ12 |
|
|
1077627 |
Kernia sp. 14PA07 |
|
|
1077829 |
Kernia sp. 15PA06 |
|
|
1077858 |
Kernia sp. 15PA09 |
|
|
1077748 |
Kernia sp. 16WV08 |
|
|
1077648 |
Kernia sp. 16WV09 |
|
|
1077571 |
Kernia sp. 21IN07 |
|
|
1077700 |
Mortierella sp. 01NH02 |
|
|
1077600 |
Mortierella sp. 02NH02 |
|
|
1077655 |
Mortierella sp. 03VT03 |
|
|
1077826 |
Mortierella sp. 04NY01 |
|
|
1077792 |
Mortierella sp. 04NY02 |
|
|
1077723 |
Mortierella sp. 04NY05 |
|
|
1077676 |
Mortierella sp. 05NY02 |
|
|
1077835 |
Mortierella sp. 06VT02 |
|
|
1077599 |
Mortierella sp. 07MA01 |
|
|
1077850 |
Mortierella sp. 07MA06 |
|
|
1077646 |
Mortierella sp. 08CT03 |
|
|
1077583 |
Mortierella sp. 09CT01 |
|
|
1077603 |
Mortierella sp. 10NY03 |
|
|
1077776 |
Mortierella sp. 11MA04 |
|
|
1077689 |
Mortierella sp. 12NJ01 |
|
|
1077656 |
Mortierella sp. 12NJ02 |
|
|
1077842 |
Mortierella sp. 14PA01 |
|
|
1077622 |
Mortierella sp. 15PA03 |
|
|
1077712 |
Mortierella sp. 16WV02 |
|
|
1077744 |
Mortierella sp. 16WV03A |
|
|
1077617 |
Mortierella sp. 17WV01 |
|
|
1077620 |
Mortierella sp. 17WV07 |
|
|
1077766 |
Mortierella sp. 18VA02 |
|
|
1077838 |
Mortierellales sp. 03VT04 |
|
|
1077668 |
Mycoarthris sp. 11MA09 |
|
|
1077691 |
Nectria sp. 06VT10 |
|
|
1077730 |
Nectria sp. 06VT11A |
|
|
1077834 |
Nectria sp. 06VT11B |
|
|
1077701 |
Neogymnomyces sp. 14PA11 |
|
|
1077580 |
Neonectria sp. 11MA06 |
|
|
1077607 |
Oidiodendron sp. 06VT08 |
|
|
1077836 |
Oidiodendron sp. 07MA11 |
|
|
1077666 |
Oidiodendron sp. 07MA13 |
|
|
1077805 |
Oidiodendron sp. 07MA18 |
|
|
1077631 |
Oidiodendron sp. 12NJ11 |
|
|
1077824 |
Oidiodendron sp. 15PA07 |
|
|
1077778 |
Oidiodendron sp. 15PA13 |
|
|
1077695 |
Oidiodendron sp. 15PA14 |
|
|
1077763 |
Oidiodendron sp. 15PA16 |
|
|
1077679 |
Oidiodendron sp. 15PA18 |
|
|
1077724 |
Oidiodendron sp. 16WV10 |
|
|
1077767 |
Oidiodendron sp. 18VA14 |
|
|
1077703 |
Oidiodendron sp. 18VA18 |
|
|
1077802 |
Oidiodendron sp. 18VA19 |
|
|
1077722 |
Oidiodendron sp. 18VA21 |
|
|
1077807 |
Oidiodendron sp. 22MS12 |
|
|
1077751 |
Oidiodendron sp. 23WI01A |
|
|
1077783 |
Oidiodendron sp. 23WI01B |
|
|
1077665 |
Oidiodendron sp. 23WI07 |
|
|
1077769 |
Oidiodendron sp. 23WI09 |
|
|
1077742 |
Oidiodendron sp. 23WI10 |
|
|
1077572 |
Oidiodendron sp. 23WI11 |
|
|
1077697 |
Oidiodendron sp. 23WI12 |
|
|
1077759 |
Oidiodendron sp. 23WI15 |
|
|
1077704 |
Oidiodendron sp. 23WI16 |
|
|
1077642 |
Oidiodendron sp. 23WI17 |
|
|
1077806 |
Oidiodendron sp. 23WI18 |
|
|
1077717 |
Oidiodendron tenuissimum AF062807 |
78154
|
3182986
|
1077719 |
Onygenales sp. 02NH15 |
|
|
1077609 |
Penicillium expansum DQ339562 |
27334
|
3068801
|
1077775 |
Penicillium sp. 02NH09 |
5081
|
9730608
|
1077794 |
Penicillium sp. 02NH16 |
5081
|
9730608
|
1077588 |
Penicillium sp. 03VT09 |
5081
|
9730608
|
1077841 |
Penicillium sp. 06VT04 |
5081
|
9730608
|
1077594 |
Penicillium sp. 06VT06 |
5081
|
9730608
|
1077614 |
Penicillium sp. 06VT09 |
5081
|
9730608
|
1077591 |
Penicillium sp. 07MA05 |
5081
|
9730608
|
1077772 |
Penicillium sp. 07MA17 |
5081
|
9730608
|
1077660 |
Penicillium sp. 08CT04 |
5081
|
9730608
|
1077626 |
Penicillium sp. 11MA10 |
5081
|
9730608
|
1077720 |
Penicillium sp. 11MA11 |
5081
|
9730608
|
1077589 |
Penicillium sp. 12NJ04 |
5081
|
9730608
|
1077819 |
Penicillium sp. 12NJ06 |
5081
|
9730608
|
1077608 |
Penicillium sp. 14PA08 |
5081
|
9730608
|
1077628 |
Penicillium sp. 16WV01 |
5081
|
9730608
|
1077698 |
Penicillium sp. 16WV04 |
5081
|
9730608
|
1077770 |
Penicillium sp. 19VA03 |
5081
|
9730608
|
1077764 |
Penicillium sp. 20KY03 |
5081
|
9730608
|
1077780 |
Penicillium sp. 21IN04 |
5081
|
9730608
|
1077731 |
Penicillium sp. 21IN09 |
5081
|
9730608
|
1077823 |
Penicillium sp. 22MS02 |
5081
|
9730608
|
1077579 |
Penicillium sp. 22MS05 |
5081
|
9730608
|
1077726 |
Penicillium sp. 22MS06 |
5081
|
9730608
|
1077788 |
Penicillium sp. 22MS10 |
5081
|
9730608
|
1077638 |
Penicillium sp. 22MS11 |
5081
|
9730608
|
1077624 |
Penicillium sp. 24MN01 |
5081
|
9730608
|
1077674 |
Penicillium sp. 24MN05 |
5081
|
9730608
|
1077844 |
Penicillium sp. 24MN15 |
5081
|
9730608
|
1077657 |
Penicillium sp. 24MN16 |
5081
|
9730608
|
1077621 |
Pleosporales sp. 13PA04 |
|
|
1077595 |
Pseudeurotium sp. 01NH01 |
|
|
1077576 |
Pseudeurotium sp. 01NH04 |
|
|
1077694 |
Pseudeurotium sp. 01NH05 |
|
|
1077832 |
Pseudeurotium sp. 02NH04 |
|
|
1077705 |
Pseudeurotium sp. 10NY02 |
|
|
1077634 |
Pseudeurotium sp. 10NY05 |
|
|
1077849 |
Pseudeurotium sp. 15PA01 |
|
|
1077754 |
Pseudeurotium sp. 15PA04 |
|
|
1077709 |
Pseudeurotium sp. 24MN02 |
|
|
1077598 |
Pseudeurotium sp. 24MN07 |
|
|
1077800 |
Pseudeurotium sp. 24MN12 |
|
|
1077680 |
Pseudocercosporella sp. 09CT02 |
|
|
1077847 |
Sistotrema sp. 20KY06 |
|
|
1077753 |
Tolypocladium sp. 01NH11 |
|
|
1077711 |
Trichocladium sp. 12NJ05 |
|
|
1077690 |
Trichocladium sp. 19VA01 |
|
|
1077801 |
Trichocladium sp. 19VA02 |
|
|
1077839 |
Trichocladium sp. 19VA04 |
|
|
1077611 |
Trichocladium sp. 19VA11 |
|
|
1077586 |
Trichophyton rubrum AF170472 |
5551
|
3148252
|
1077852 |
Trichophyton sp. 19VA05 |
|
|
1077739 |
Trichophyton sp. 19VA06 |
|
|
1077671 |
Trichophyton sp. 19VA08 |
|
|
1077750 |
Trichophyton sp. 19VA09 |
|
|
1077604 |
Trichophyton sp. 19VA10 |
|
|
1077632 |
Trichophyton sp. 19VA12 |
|
|
1077734 |
Trichophyton sp. 19VA13 |
|
|
1077846 |
Trichophyton sp. 20KY07 |
|
|
1077728 |
Trichosporon chiarellii ATCC MYA 4694 HQ999971 |
|
|
1077578 |
Trichosporon sp. 01NH03 |
|
|
1077678 |
Trichosporon sp. 02NH01 |
|
|
1077649 |
Trichosporon sp. 03VT02 |
|
|
1077667 |
Trichosporon sp. 04NY03 |
|
|
1077681 |
Trichosporon sp. 05NY01 |
|
|
1077623 |
Trichosporon sp. 06VT03 |
|
|
1077791 |
Trichosporon sp. 16WV06 |
|
|
1077714 |
Trichosporon sp. 20KY05 |
|
|
1077718 |
Verticillium sp. 03VT07 |
5107
|
10130455
|
1077854 |
Verticillium sp. 03VT08 |
5107
|
10130455
|
1077673 |
Verticillium sp. 14PA10 |
5107
|
10130455
|
1077597 |
Verticillium sp. 17WV12 |
5107
|
10130455
|
1077733 |
Verticillium sp. 24MN19 |
5107
|
10130455
|