@ARTICLE{TreeBASE2Ref21275,
author = {Jeffrey M. Lorch and Daniel L. Lindner and Andrea Gargas and Laura K Muller and Andrew M Minnis and David S. Blehert},
title = {A culture-based survey of fungi in soil from bat hibernacula in the eastern United States and its implications for detection of Geomyces destructans, the causal agent of bat white-nose syndrome},
year = {2012},
keywords = {white-nose syndrome, bat, wildlife disease, skin infection, Geomyces},
doi = {},
url = {http://},
pmid = {},
journal = {Mycologia},
volume = {},
number = {},
pages = {},
abstract = {The recent emergence of white-nose syndrome (WNS), a fungal disease causing unprecedented mortality among hibernating bats of eastern North America, has revealed a knowledge gap regarding fungal communities associated with bats and their hibernacula. We used culture-based techniques to investigate the diversity of fungi in soil samples collected from 24 bat hibernacula in the eastern United States. Ribosomal RNA regions (internal transcribed spacer and partial intergenic spacer) were sequenced to preliminarily characterize isolates. Geomyces species were one of the most abundant and diverse groups cultured, representing approximately 33% of all isolates. Geomyces destructans was isolated from soil samples from three hibernacula and many of the cultured Geomyces isolates likely represent undescribed taxa. Further characterization of the diversity of fungi that occur in hibernacula will both facilitate an improved understanding of the ecology of G. destructans within this complex fungal community and provide an opportunity to identify characteristics that differentiate G. destructans from non-pathogenic relatives.}
}
Taxa for matrix 16815 of Study 13306

Citation title:
"A culture-based survey of fungi in soil from bat hibernacula in the eastern United States and its implications for detection of Geomyces destructans, the causal agent of bat white-nose syndrome".

Study name:
"A culture-based survey of fungi in soil from bat hibernacula in the eastern United States and its implications for detection of Geomyces destructans, the causal agent of bat white-nose syndrome".

This study is part of submission 13306
(Status: Published).
Taxa
Return to matrix row view
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
1077872 |
Bisporella citrina Andy92703 AY789386 |
155150
|
3189634
|
1077855 |
Geomyces destructans 07MA10 |
655981
|
|
1077641 |
Geomyces destructans 08CT06 |
655981
|
|
1077708 |
Geomyces destructans 20631 21 EU884921 |
655981
|
|
1077886 |
Geomyces luteus P295 D2 23 JF311972 |
324015
|
10272618
|
1077864 |
Geomyces luteus RR135 AJ938164 |
324015
|
10272618
|
1077877 |
Geomyces pannorum ATCC 11501 FJ545236 |
79858
|
3194018
|
1077889 |
Geomyces pannorum UAMH 1030 DQ117436 |
79858
|
3194018
|
1077884 |
Geomyces pannorum UAMH1088 DQ117442 |
79858
|
3194018
|
1077867 |
Geomyces pannorum UAMH714 DQ117446 |
79858
|
3194018
|
1077871 |
Geomyces pannorum var asperulatus UAMH183 DQ117444 |
64687
|
3033435
|
1077828 |
Geomyces sp. 01NH06 |
|
|
1077688 |
Geomyces sp. 01NH07 |
|
|
1077644 |
Geomyces sp. 01NH08 |
|
|
1077811 |
Geomyces sp. 01NH10 |
|
|
1077857 |
Geomyces sp. 01NH12 |
|
|
1077664 |
Geomyces sp. 02NH05 |
|
|
1077732 |
Geomyces sp. 02NH08 |
|
|
1077640 |
Geomyces sp. 02NH11 |
|
|
1077741 |
Geomyces sp. 02NH14 |
|
|
1077813 |
Geomyces sp. 04NY09 |
|
|
1077651 |
Geomyces sp. 04NY10 |
|
|
1077570 |
Geomyces sp. 04NY11 |
|
|
1077837 |
Geomyces sp. 04NY14 |
|
|
1077613 |
Geomyces sp. 04NY16 |
|
|
1077682 |
Geomyces sp. 04NY17A |
|
|
1077820 |
Geomyces sp. 04NY17B |
|
|
1077696 |
Geomyces sp. 05NY04 |
|
|
1077596 |
Geomyces sp. 05NY05 |
|
|
1077736 |
Geomyces sp. 05NY06 |
|
|
1077747 |
Geomyces sp. 05NY07 |
|
|
1077713 |
Geomyces sp. 05NY08 |
|
|
1077630 |
Geomyces sp. 05NY09 |
|
|
1077661 |
Geomyces sp. 06VT05 |
|
|
1077659 |
Geomyces sp. 06VT12 |
|
|
1077684 |
Geomyces sp. 07MA02 |
|
|
1077601 |
Geomyces sp. 07MA04 |
|
|
1077743 |
Geomyces sp. 07MA07 |
|
|
1077635 |
Geomyces sp. 07MA08 |
|
|
1077782 |
Geomyces sp. 07MA09 |
|
|
1077817 |
Geomyces sp. 07MA14 |
|
|
1077584 |
Geomyces sp. 10NY04 |
|
|
1077856 |
Geomyces sp. 10NY06 |
|
|
1077814 |
Geomyces sp. 10NY07 |
|
|
1077685 |
Geomyces sp. 10NY08 |
|
|
1077727 |
Geomyces sp. 10NY09 |
|
|
1077762 |
Geomyces sp. 10NY10 |
|
|
1077658 |
Geomyces sp. 11MA03 |
|
|
1077662 |
Geomyces sp. 11MA05 |
|
|
1077789 |
Geomyces sp. 11MA07 |
|
|
1077740 |
Geomyces sp. 11MA08 |
|
|
1077612 |
Geomyces sp. 12NJ08 |
|
|
1077692 |
Geomyces sp. 12NJ10 |
|
|
1077777 |
Geomyces sp. 12NJ13 |
|
|
1077765 |
Geomyces sp. 12NJ15 |
|
|
1077795 |
Geomyces sp. 13PA01 |
|
|
1077779 |
Geomyces sp. 14PA05 |
|
|
1077758 |
Geomyces sp. 14PA06 |
|
|
1077581 |
Geomyces sp. 15PA02 |
|
|
1077830 |
Geomyces sp. 15PA05 |
|
|
1077863 |
Geomyces sp. 15PA10A |
|
|
1077827 |
Geomyces sp. 15PA11 |
|
|
1077647 |
Geomyces sp. 16WV05 |
|
|
1077653 |
Geomyces sp. 17WV02 |
|
|
1077573 |
Geomyces sp. 17WV03 |
|
|
1077606 |
Geomyces sp. 17WV04 |
|
|
1077645 |
Geomyces sp. 17WV05 |
|
|
1077602 |
Geomyces sp. 17WV06 |
|
|
1077745 |
Geomyces sp. 17WV09 |
|
|
1077799 |
Geomyces sp. 17WV15 |
|
|
1077737 |
Geomyces sp. 18VA07 |
|
|
1077615 |
Geomyces sp. 18VA08 |
|
|
1077793 |
Geomyces sp. 18VA09 |
|
|
1077809 |
Geomyces sp. 18VA10 |
|
|
1077574 |
Geomyces sp. 18VA12 |
|
|
1077853 |
Geomyces sp. 18VA13 |
|
|
1077818 |
Geomyces sp. 18VA15 |
|
|
1077575 |
Geomyces sp. 18VA16 |
|
|
1077862 |
Geomyces sp. 18VA17 |
|
|
1077670 |
Geomyces sp. 20KY01 |
|
|
1077618 |
Geomyces sp. 20KY02 |
|
|
1077773 |
Geomyces sp. 20KY04 |
|
|
1077833 |
Geomyces sp. 20KY08 |
|
|
1077643 |
Geomyces sp. 20KY10 |
|
|
1077729 |
Geomyces sp. 20KY12 |
|
|
1077650 |
Geomyces sp. 21IN01 |
|
|
1077669 |
Geomyces sp. 21IN05 |
|
|
1077605 |
Geomyces sp. 21IN06 |
|
|
1077810 |
Geomyces sp. 21IN08 |
|
|
1077851 |
Geomyces sp. 21IN10 |
|
|
1077883 |
Geomyces sp. 230141 I2 zITS |
|
|
1077891 |
Geomyces sp. 230141 I6 zITS |
|
|
1077878 |
Geomyces sp. 233421 I1 zITS |
|
|
1077652 |
Geomyces sp. 23WI05 |
|
|
1077592 |
Geomyces sp. 23WI06 |
|
|
1077786 |
Geomyces sp. 23WI08 |
|
|
1077725 |
Geomyces sp. 23WI14 |
|
|
1077699 |
Geomyces sp. 24MN03 |
|
|
1077619 |
Geomyces sp. 24MN04 |
|
|
1077822 |
Geomyces sp. 24MN06 |
|
|
1077803 |
Geomyces sp. 24MN09 |
|
|
1077610 |
Geomyces sp. 24MN10 |
|
|
1077582 |
Geomyces sp. 24MN11 |
|
|
1077735 |
Geomyces sp. 24MN13 |
|
|
1077840 |
Geomyces sp. 24MN14 |
|
|
1077845 |
Geomyces sp. 24MN17 |
|
|
1077677 |
Geomyces sp. 24MN18 |
|
|
1077790 |
Geomyces sp. 24MN28 |
|
|
1077797 |
Geomyces sp. 24MN33 |
|
|
1077874 |
Gymnostellatospora alpina UAMH9430 DQ117459 |
342674
|
3363060
|
1077865 |
Gymnostellatospora canadensis UAMH8899 DQ117448 |
342670
|
3356387
|
1077868 |
Gymnostellatospora frigida UAMH9304 DQ117457 |
342673
|
3261639
|
1077879 |
Gymnostellatospora japonica UAMH 9239 DQ117454 |
78132
|
3230526
|
1077870 |
Gymnostellatospora subnuda UAMH9242 DQ117456 |
342672
|
3356388
|
1077881 |
Leptodontidium boreale CBS682 76 AY129284 |
205359
|
3195916
|
1077885 |
Leptodontidium elatius var elatius CBS329 53 AY129285 |
205357
|
3922930
|
1077668 |
Mycoarthris sp. 11MA09 |
|
|
1077890 |
Myxotrichum chartarum AF062813 |
78137
|
3123270
|
1077607 |
Oidiodendron sp. 06VT08 |
|
|
1077836 |
Oidiodendron sp. 07MA11 |
|
|
1077666 |
Oidiodendron sp. 07MA13 |
|
|
1077631 |
Oidiodendron sp. 12NJ11 |
|
|
1077778 |
Oidiodendron sp. 15PA13 |
|
|
1077695 |
Oidiodendron sp. 15PA14 |
|
|
1077763 |
Oidiodendron sp. 15PA16 |
|
|
1077679 |
Oidiodendron sp. 15PA18 |
|
|
1077724 |
Oidiodendron sp. 16WV10 |
|
|
1077767 |
Oidiodendron sp. 18VA14 |
|
|
1077703 |
Oidiodendron sp. 18VA18 |
|
|
1077802 |
Oidiodendron sp. 18VA19 |
|
|
1077722 |
Oidiodendron sp. 18VA21 |
|
|
1077807 |
Oidiodendron sp. 22MS12 |
|
|
1077665 |
Oidiodendron sp. 23WI07 |
|
|
1077769 |
Oidiodendron sp. 23WI09 |
|
|
1077742 |
Oidiodendron sp. 23WI10 |
|
|
1077697 |
Oidiodendron sp. 23WI12 |
|
|
1077759 |
Oidiodendron sp. 23WI15 |
|
|
1077642 |
Oidiodendron sp. 23WI17 |
|
|
1077806 |
Oidiodendron sp. 23WI18 |
|
|
1077882 |
Pseudeurotium bakeri CBS878 71 AY129287 |
205925
|
3215049
|
1077876 |
Pseudeurotium desertorum CBS986 72 AY129288 |
205926
|
3200179
|
1077873 |
Pseudeurotium ovale var milkoi CBS443 78 AY129290 |
205929
|
3920408
|
1077869 |
Pseudeurotium ovale var ovale CBS389 54 AY129289 |
205928
|
3922949
|
1077595 |
Pseudeurotium sp. 01NH01 |
|
|
1077576 |
Pseudeurotium sp. 01NH04 |
|
|
1077694 |
Pseudeurotium sp. 01NH05 |
|
|
1077832 |
Pseudeurotium sp. 02NH04 |
|
|
1077705 |
Pseudeurotium sp. 10NY02 |
|
|
1077634 |
Pseudeurotium sp. 10NY05 |
|
|
1077849 |
Pseudeurotium sp. 15PA01 |
|
|
1077754 |
Pseudeurotium sp. 15PA04 |
|
|
1077709 |
Pseudeurotium sp. 24MN02 |
|
|
1077598 |
Pseudeurotium sp. 24MN07 |
|
|
1077800 |
Pseudeurotium sp. 24MN12 |
|
|
1077888 |
Pseudeurotium zonatum CBS 329 36 AY129286 |
95332
|
3871606
|
1077887 |
Pseudogymnoascus appendiculatus UAMH10510 DQ117437 |
342667
|
10283928
|
1077880 |
Pseudogymnoascus roseus UAMH1658 DQ117443 |
78157
|
3162817
|
1077875 |
Pseudogymnoascus verrucosus UAMH10579 DQ117440 |
342668
|
10283929
|
1077866 |
Teberdinia hygrophila CBS102670 AY129291 |
205840
|
5970615
|