@ARTICLE{TreeBASE2Ref21403,
author = {Juan Carlos Villarreal and Susanne S Renner},
title = {Hornwort pyrenoids: carbon-concentrating mechanisms evolved and were lost at least five times during the last 100 million years},
year = {2013},
keywords = {hornwort, pyrenoid, carbon concentrating mechanisms, CO2},
doi = {},
url = {http://},
pmid = {},
journal = {Proceedings of the National Academy of Sciences U.S.A.},
volume = {},
number = {},
pages = {},
abstract = {RuBisCO has a crucial role in carbon fixation but a slow catalytic rate, a problem overcome in some plant lineages by physiological and anatomical traits that elevate carbon concentrations around the enzyme. Such carbon-concentrating mechanisms (CCMs) are hypothesized to have evolved during periods of low atmospheric CO2. Hornworts, the sister to vascular plants, have a CCM that relies on pyrenoids, proteinaceous bodies mostly consisting of RuBisCO. We generated a phylogeny based on mitochondrial and plastid sequences for 36% of the c. 200 hornwort species to infer the history of gains and losses of pyrenoids in this clade; we also used fossils and multiple dating approaches to generate a chronogram for the hornworts.
The results imply 5-6 origins and an equal number of subsequent losses of pyrenoids in hornworts, with the oldest pyrenoid gained ca. 100 mya, and most others at <35 mya. The non-synchronous appearance of pyrenoid-containing clades, the successful diversification of pyrenoid-lacking clades during periods with low CO2, and the maintenance of pyrenoids during episodes of high [CO2] all argue against the previously proposed relationship between pyrenoid origin and low [CO2]. The selective advantages, and costs, of hornwort pyrenoids thus must relate to additional factors besides atmospheric CO2.
}
}
Taxa for matrix 14586 of Study 13448

Citation title:
"Hornwort pyrenoids: carbon-concentrating mechanisms evolved and were lost at least five times during the last 100 million years".

Study name:
"Hornwort pyrenoids: carbon-concentrating mechanisms evolved and were lost at least five times during the last 100 million years".

This study is part of submission 13448
(Status: Published).
Taxa
Return to matrix row view
| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 909206 |
Anthoceros agrestis |
41834
|
2644328
|
| 909202 |
Anthoceros angustus |
|
|
| 909226 |
Anthoceros caucasicus |
|
|
| 909205 |
Anthoceros fusiformis |
400545
|
2644314
|
| 909196 |
Anthoceros lamellatus |
400546
|
2644329
|
| 909165 |
Anthoceros laminiferus |
263837
|
5977224
|
| 909176 |
Anthoceros macounii |
|
2644315
|
| 909214 |
Anthoceros neesii |
|
7149341
|
| 909173 |
Anthoceros orizabensis |
|
|
| 909200 |
Anthoceros patagonicus subsp gremmensis |
|
|
| 909174 |
Anthoceros punctatus |
3234
|
2814023
|
| 909169 |
Anthoceros sambesianus |
|
|
| 909170 |
Anthoceros scariosus |
|
|
| 909158 |
Anthoceros tristanianus |
|
|
| 909209 |
Anthoceros tuberculatus |
|
3413971
|
| 909230 |
Anthoceros venosus |
|
3413963
|
| 909189 |
Azolla filiculoides |
84609
|
2645022
|
| 909217 |
Blechnum brasiliense |
32072
|
3417800
|
| 909148 |
Dendroceros breutelii |
|
3414016
|
| 909147 |
Dendroceros chicoraceus |
|
|
| 909203 |
Dendroceros crispatus |
263831
|
3414001
|
| 909184 |
Dendroceros crispus |
400549
|
3414015
|
| 909219 |
Dendroceros difficilis |
|
3414003
|
| 909182 |
Dendroceros javanicus |
|
3414010
|
| 909175 |
Dendroceros paivae |
|
|
| 909220 |
Equisetum hyemale |
3262
|
2644424
|
| 909167 |
Folioceros fuciformis |
263834
|
5993437
|
| 909192 |
Folioceros glandulosus |
|
|
| 909201 |
Huperzia selago |
70001
|
2664998
|
| 909210 |
Isoetes lacustris |
50271
|
2644407
|
| 909155 |
Leiosporoceros dussii |
263836
|
5977223
|
| 909161 |
Lygodium circinatum |
84615
|
5957996
|
| 909146 |
Megaceros denticulatus |
263823
|
5977216
|
| 909150 |
Megaceros flagellaris |
263821
|
5977214
|
| 909190 |
Megaceros gracilis |
263822
|
5977215
|
| 909166 |
Megaceros minarum |
|
|
| 909212 |
Megaceros pellucidus |
263824
|
5977217
|
| 909177 |
Nothoceros aenigmaticus |
|
|
| 909171 |
Nothoceros canaliculatus |
|
|
| 909211 |
Nothoceros canaliculatus subsp nova |
|
|
| 909222 |
Nothoceros endiviaefolius |
402704
|
10322148
|
| 909215 |
Nothoceros fuegiensis |
|
|
| 909163 |
Nothoceros giganteus |
263828
|
10242022
|
| 909193 |
Nothoceros renzagliensis |
|
|
| 909216 |
Nothoceros superbus |
|
|
| 909156 |
Nothoceros vincentianus |
|
|
| 909223 |
Notothylas breutelii |
81810
|
2644318
|
| 909179 |
Notothylas dissecta |
|
3414027
|
| 909229 |
Notothylas javanica |
400702
|
10320828
|
| 909232 |
Notothylas levieri |
|
|
| 909151 |
Notothylas orbicularis |
93617
|
2644319
|
| 909204 |
Notothylas vitallii |
|
|
| 909152 |
Osmunda regalis |
3285
|
2644461
|
| 909183 |
Paraphymatoceros diadematus |
|
|
| 909194 |
Paraphymatoceros hallii |
|
|
| 909149 |
Paraphymatoceros pearsonii |
|
|
| 909172 |
Paraphymatoceros proskauerii |
|
|
| 909154 |
Phaeoceros bolussi |
|
|
| 909186 |
Phaeoceros brevicapsulus |
|
|
| 909221 |
Phaeoceros carolinianus |
185665
|
2644331
|
| 909228 |
Phaeoceros dendroceroides |
|
|
| 909187 |
Phaeoceros engellii |
|
|
| 909198 |
Phaeoceros evanidus |
|
|
| 909160 |
Phaeoceros flexivalvis |
|
|
| 909218 |
Phaeoceros himalayensis |
|
|
| 909231 |
Phaeoceros inflatus |
|
|
| 909197 |
Phaeoceros laevis |
37308
|
2644322
|
| 909185 |
Phaeoceros microsporus |
|
2768291
|
| 909162 |
Phaeoceros minutus |
|
|
| 909153 |
Phaeoceros mohrii |
400557
|
2644332
|
| 909227 |
Phaeoceros oreganus |
400558
|
2768293
|
| 909199 |
Phaeoceros tenuis |
|
|
| 909188 |
Phaeomegaceros chiloensis |
|
|
| 909233 |
Phaeomegaceros coriaceus |
405431
|
10324115
|
| 909224 |
Phaeomegaceros fimbriatus |
402703
|
10322143
|
| 909157 |
Phaeomegaceros hirticalyx |
405432
|
10324118
|
| 909213 |
Phaeomegaceros plicatus |
|
|
| 909181 |
Phaeomegaceros skottsbergii |
405424
|
10324102
|
| 909191 |
Phaeomegaceros sp |
|
|
| 909159 |
Phaeomegaceros squamuligerus |
|
|
| 909208 |
Phaeomegaceros squamuligerus subsp hassellii |
|
|
| 909180 |
Phymatoceros bulbiculosus |
319832
|
5982931
|
| 909195 |
Phymatoceros phymatodes |
405425
|
10324106
|
| 909207 |
Psilotum nudum |
3240
|
2644339
|
| 909168 |
Sphaerosporoceros adscendens |
400566
|
2768294
|
| 909178 |
Takakia ceratophylla |
253518
|
3873552
|
| 909225 |
Treubia lacunosa |
93845
|
5958888
|
| 909164 |
Trichomanes radicans |
49543
|
2644960
|