@ARTICLE{TreeBASE2Ref21462,
author = {Gregory Michael Bonito},
title = {Historical biogeography and diversification of truffles in the Tuberaceae and their newly identified Southern hemisphere sister lineage},
year = {2012},
keywords = {fungal evolution, phylogenetics, divergence time estimation, Tuber, ectomycorrhizal lineages, hypogeous fungi, biogeography},
doi = {},
url = {http://},
pmid = {},
journal = {PLOSone},
volume = {},
number = {},
pages = {},
abstract = {Truffles have evolved from epigeous (aboveground) ancestors in nearly every major lineage of fleshy fungi. Because accelerated rates of morphological evolution accompany the transition to the truffle form, closely related epigeous ancestors remain unknown for most truffle lineages. This is the case for the quintessential truffle genus Tuber, which includes species with socio-economic importance and esteemed culinary attributes. Ecologically, Tuber spp. form obligate mycorrhizal symbioses with a diverse species of plant hosts including pines, oaks, poplars, orchids, and commercially important trees such as hazelnut and pecan. Unfortunately, limited geographic sampling and inconclusive phylogenetic relationships have obscured our understanding of their origin, biogeography, and diversification. To address this problem, we present a global sampling of Tuberaceae based on DNA sequence data from four loci for phylogenetic inference and molecular dating. Our well-resolved Tuberaceae phylogeny shows high levels of regional and continental endemism. We also identify a previously unknown epigeous member of the Tuberaceae ? the South American cup-fungus Nothojafnea thaxteri (Cash) Gamund?. Phylogenetic resolution was further improved through the inclusion of a previously unrecognized Southern hemisphere sister group of the Tuberaceae. This morphologically diverse assemblage of fungi includes truffle forms endemic to Australia and South America (e.g. Gymnohydnotrya spp.) and non-truffle species. The Southern hemisphere taxa appear to have diverged more recently than the Northern hemisphere lineages. Our analysis of the Tuberaceae suggests that Tuber evolved from an epigeous ancestor. Molecular dating estimates that the Tuberaceae diverged in the late Jurassic (~156 million years ago), with subsequent radiations in the Cretaceous and Paleogene. Intra-continental diversification, limited long-distance dispersal, and ecological adaptations have driven truffle evolution and Tuberaceae biodiversity.}
}
Taxa for tree 58017 of Study 13537

Citation title:
"Historical biogeography and diversification of truffles in the Tuberaceae and their newly identified Southern hemisphere sister lineage".

Study name:
"Historical biogeography and diversification of truffles in the Tuberaceae and their newly identified Southern hemisphere sister lineage".

This study is part of submission 13537
(Status: Published).
Taxa
Return to complete tree view
| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 920741 |
Choiromyces alveolatus 97 |
177096
|
3191032
|
| 920746 |
Choiromyces meandriformis RH691 Iowa |
68612
|
3058906
|
| 920725 |
Dingleya JT20122 Australia |
|
|
| 920731 |
Dingleya JT27860 Australia |
|
|
| 920762 |
Dingleya JT31575 Australia |
|
|
| 920656 |
Gymnohydnotrya australiana OSC130601 |
|
3047852
|
| 920756 |
Gymnohydnotrya echinulata clar4529 |
|
|
| 920695 |
L C04 EcM Salix humboldtiana Argentina |
|
|
| 920664 |
Labyrinthomyces JT25359 Australia |
|
|
| 920733 |
Labyrinthomyces JT27750 Australia |
|
|
| 920707 |
Labyrinthomyces JT28801 Australia |
|
|
| 920728 |
Leppia JT28813 Australia |
|
|
| 920780 |
Nothojafnea cf thaxterii N10 Argentina |
|
|
| 920713 |
Nothojafnia cf thaxterii N10 Argentina |
|
|
| 920706 |
P5M4 5a EcM Nothofagus obliqua Argentina |
|
|
| 920684 |
R8M8 7x EcM Nothofagus alpina Argentina |
|
|
| 920717 |
Reddellomyces JT27723 Australia |
|
|
| 920715 |
Reddellomyces JT27724 Australia |
|
|
| 920740 |
Reddellomyces JT27799 Australia |
|
|
| 920748 |
Reddellomyces JT6873 Australia |
|
|
| 920737 |
Tuber JT9769 Nepal |
|
|
| 920708 |
Tuber aestivum China GQ217542 |
|
|
| 920760 |
Tuber aestivum GB202 Italy |
59557
|
1454762
|
| 920686 |
Tuber anniae JT13209 Washington holotype |
|
3279228
|
| 920771 |
Tuber asa M1828 Italy |
381831
|
10309018
|
| 920702 |
Tuber bellisporum JT11679 Oregon holotype |
|
|
| 920747 |
Tuber beyeleri JT32597 Oregon |
|
|
| 920774 |
Tuber borchii GB14 Italy |
42251
|
1454765
|
| 920775 |
Tuber brumale GB22 Italy |
60458
|
3126211
|
| 920723 |
Tuber californicum JT28058 California |
92708
|
3126315
|
| 920691 |
Tuber canaliculatum JT28215 New Jersey |
349718
|
3126184
|
| 920677 |
Tuber castellanoi JT28069 California holotype |
|
|
| 920676 |
Tuber dryophilum GB37 Italy |
64384
|
3918243
|
| 920670 |
Tuber excavatum BM100 Spain |
60451
|
3125205
|
| 920657 |
Tuber excavatum China GQ217540 |
|
|
| 920662 |
Tuber excavatum OSC80639 Italy |
60451
|
3125205
|
| 920739 |
Tuber ferrugineum MA2721 Italy |
42250
|
3125014
|
| 920675 |
Tuber fulgens M2435 Italy |
554502
|
3121353
|
| 920692 |
Tuber gennadii JT9627 Spain paratype |
|
|
| 920766 |
Tuber gennadii M1904 Italy |
|
|
| 920663 |
Tuber gibbosum JT30580 Oregon |
353052
|
3095001
|
| 920777 |
Tuber indicum A GB240 China |
|
|
| 920743 |
Tuber indicum B JT29410 Oregon |
|
|
| 920764 |
Tuber liaotongense OSC87602 China |
381835
|
3263489
|
| 920767 |
Tuber lyonii OSC58244 Texas |
421002
|
10333431
|
| 920719 |
Tuber macrosporum JT13362 Italy |
92903
|
3094904
|
| 920703 |
Tuber magnatum GB13 Italy |
42249
|
1454769
|
| 920660 |
Tuber malacodermum JT32319 Spain |
|
|
| 920673 |
Tuber melanosporum GB200 Italy |
39416
|
3096480
|
| 920690 |
Tuber mesentericum CW105 Sweden |
92904
|
3086647
|
| 920779 |
Tuber mexiusanum ITCV885 Mexico |
|
|
| 920699 |
Tuber multimaculatum OSC62169 Spain paratype |
|
|
| 920752 |
Tuber nitidum BM105 Spain |
382148
|
3106649
|
| 920754 |
Tuber oregonense JT30493 Oregon paratype |
|
|
| 920672 |
Tuber panniferum JT12835 Spain |
74851
|
3144119
|
| 920668 |
Tuber pseudoexcavatum CJ408 China |
334820
|
3284315
|
| 920720 |
Tuber regimontanum ITCV909 Mexico holotype |
512386
|
|
| 920772 |
Tuber rufum GB213 Italy |
119233
|
3918833
|
| 920688 |
Tuber shearii OSC51052 North Carolina |
|
|
| 920726 |
Tuber sp ITCV908 Mexico |
|
|
| 920655 |
Tuber sp ITCV910 Mexico |
|
|
| 920749 |
Tuber sp JT13224 West Virginia |
|
|
| 920769 |
Tuber sp JT32567 Mexico |
|
|
| 920761 |
Tuber sp RH73 Iowa |
|
|
| 920701 |
Tuber sp TB10248 New York |
|
|
| 920671 |
Tuber sp1 K201 Japan |
|
|
| 920768 |
Tuber sp14 K186 Japan |
|
|
| 920730 |
Tuber sp2 K215 Japan |
|
|
| 920778 |
Tuber sp33 China |
|
|
| 920721 |
Tuber sp7 K408 Japan |
|
|
| 920711 |
Tuber sp8 K228 Japan |
|
|
| 920712 |
Tuber sp9 K213 Japan |
|
|
| 920755 |
Tuber sphaerosporum JT12487 Oregon |
|
3148481
|
| 920654 |
Tuber spinoreticulatum U188 Maryland isotype |
|
3203493
|
| 920687 |
Underwoodia beatonii JT28380 Australia |
|
3217837
|
| 920744 |
Underwoodia singeri mes161 Chile |
|
3203662
|