@ARTICLE{TreeBASE2Ref21631,
author = {Paul Andrew Covey and Mia Hanson and Brett Kuwitzky and Kimberly Webb},
title = {Multilocus analysis using fungal pathogenicity genes to describe Fusarium oxysporum from Sugar Beet},
year = {2013},
keywords = {Fusarium oxysporum f. sp. betae, Fusarium yellows, Sugar beet, Beta vulgaris, Effectors, Pathogen, AMOVA, Arlequin},
doi = {},
url = {http://},
pmid = {},
journal = {Phytopathology},
volume = {},
number = {},
pages = {},
abstract = {Sugar beet (Beta vulgaris L.) Fusarium yellows is caused by Fusarium oxysporum Schlechtend.:Fr. f. sp. betae (D. Stewart) and leads to significant reductions in root yield, sucrose percentage, juice purity, and storability. F. oxysporum f. sp. betae can be highly variable and many F. oxysporum isolated from symptomatic sugar beet are non-pathogenic. Identifying pathogenicity factors and their diversity in the F. oxysporum f. sp. betae population, could further understanding of how this pathogen causes disease and provide molecular markers to rapidly identify pathogenic isolates. This study used several previously described fungal pathogenicity genes (Fmk1, Fow1, Pda1, PelA, PelD, Pep1, Prt1, Rho1, Sge1, Six1, Six6, Snf1, and Ste12) as genetic markers, in a population of 26 pathogenic and non-pathogenic isolates of F. oxysporum originally isolated from symptomatic sugar beet. Of the genes investigated, 6 were present in all F. oxysporum isolates from sugar beet (Fmk1, Fow1, PelA, Rho1, Snf1, and Ste12), and 7 were found to be dispersed within the population (Pda1, PelD, Pep1, Prt1, Sge1, Six1, and Six6). Of these, Fmk1, Fow1, PelA, Rho1, Sge1, Snf1, and Ste12 were significant in describing clade designations and PelD, and Prt1 were significant for describing pathogenicity in F. oxysporum f. sp. betae. }
}
Taxa for tree 60316 of Study 13754

Citation title:
"Multilocus analysis using fungal pathogenicity genes to describe Fusarium oxysporum from Sugar Beet".

Study name:
"Multilocus analysis using fungal pathogenicity genes to describe Fusarium oxysporum from Sugar Beet".

This study is part of submission 13754
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
971360 |
Fusarium avenaceum F20 Tef1-a |
40199
|
3917234
|
971378 |
Fusarium graminearum PH-1 Tef1-a |
194397
|
3103141
|
971353 |
Fusarium oxysporum F.sp betae F17 Tef1-a |
5507
|
1449647
|
971350 |
Fusarium oxysporum F.sp betae F174 Tef1-a |
5507
|
1449647
|
971373 |
Fusarium oxysporum F.sp betae F19 Tef1-a |
5507
|
1449647
|
971374 |
Fusarium oxysporum F.sp betae F28 Tef1-a |
5507
|
1449647
|
971389 |
Fusarium oxysporum F.sp betae F38 Tef1-a |
5507
|
1449647
|
971349 |
Fusarium oxysporum F.sp betae F46 Tef1-a |
5507
|
1449647
|
971371 |
Fusarium oxysporum F.sp betae Fo17 Tef1-a |
5507
|
1449647
|
971347 |
Fusarium oxysporum F.sp betae Fo37 Tef1-a |
5507
|
1449647
|
971380 |
Fusarium oxysporum F.sp betae Fob13 Tef1-a |
5507
|
1449647
|
971365 |
Fusarium oxysporum F.sp betae Fob216c Tef1-a |
5507
|
1449647
|
971386 |
Fusarium oxysporum F.sp betae Fob220a Tef1-a |
5507
|
1449647
|
971369 |
Fusarium oxysporum F.sp betae Fob257a Tef1-a |
5507
|
1449647
|
971388 |
Fusarium oxysporum F.sp betae H7 Tef1-a |
5507
|
1449647
|
971358 |
Fusarium oxysporum F.sp betae H8 Tef1-a |
5507
|
1449647
|
971385 |
Fusarium oxysporum F.sp conglutinans PHW808 Tef1-a |
5507
|
1449647
|
971382 |
Fusarium oxysporum F.sp cubense II5 Tef1-a |
5507
|
1449647
|
971363 |
Fusarium oxysporum F.sp lycopersici Fol4287 Tef1-a |
5507
|
1449647
|
971377 |
Fusarium oxysporum F.sp lycopersici MN25 Tef1-a |
5507
|
1449647
|
971387 |
Fusarium oxysporum F.sp melonis NRRL 26406 Tef1-a |
5507
|
1449647
|
971355 |
Fusarium oxysporum F.sp pisi HDV247 Tef1-a |
5507
|
1449647
|
971354 |
Fusarium oxysporum F.sp radicis-lycopersici CL57 Tef1-a |
5507
|
1449647
|
971352 |
Fusarium oxysporum F.sp raphani PHW815 Tef1-a |
5507
|
1449647
|
971370 |
Fusarium oxysporum F.sp spinaciae FUS001 Tef1-a |
5507
|
1449647
|
971361 |
Fusarium oxysporum F.sp spinaciae FUS003 Tef1-a |
5507
|
1449647
|
971375 |
Fusarium oxysporum F.sp spinaciae FUS004 Tef1-a |
5507
|
1449647
|
971376 |
Fusarium oxysporum F.sp vasinfectum NRRL 25433 Tef1-a |
5507
|
1449647
|
971372 |
Fusarium oxysporum F02-78 Tef1-a |
5507
|
1449647
|
971367 |
Fusarium oxysporum F05-157 Tef1-a |
5507
|
1449647
|
971356 |
Fusarium oxysporum F05-284 Tef1-a |
5507
|
1449647
|
971383 |
Fusarium oxysporum F05-77 Tef1-a |
5507
|
1449647
|
971348 |
Fusarium oxysporum F14 Tef1-a |
5507
|
1449647
|
971391 |
Fusarium oxysporum F15 Tef1-a |
5507
|
1449647
|
971359 |
Fusarium oxysporum F29 Tef1-a |
5507
|
1449647
|
971366 |
Fusarium oxysporum F30 Tef1-a |
5507
|
1449647
|
971368 |
Fusarium oxysporum F33 Tef1-a |
5507
|
1449647
|
971381 |
Fusarium oxysporum FOSC 3a Tef1-a |
5507
|
1449647
|
971357 |
Fusarium oxysporum Fo23 Tef1-a |
5507
|
1449647
|
971379 |
Fusarium oxysporum Fo25 Tef1-a |
5507
|
1449647
|
971390 |
Fusarium oxysporum Fo27 Tef1-a |
5507
|
1449647
|
971384 |
Fusarium oxysporum Fo29 Tef1-a |
5507
|
1449647
|
971346 |
Fusarium oxysporum Fo47 Tef1-a |
5507
|
1449647
|
971351 |
Fusarium proliferatum F182 Tef1-a |
42674
|
3234698
|
971364 |
Fusarium proliferatum Fob273a Tef1-a |
42674
|
3234698
|
971362 |
Fusarium verticillioides Strain 7600 Tef1-a |
117187
|
3193856
|