@ARTICLE{TreeBASE2Ref21965,
author = {Karen Hughes and Ronald Petersen and D. Jean Lodge and Sarah E. Bergemann and kendra baumgartner and Rodham E. Tulloss and Edgar Lickey and Joaquin Cifuentes},
title = {Evolutionary consequences of putative intra- and interspecific hybridization in agaric fungi.},
year = {2013},
keywords = {biodiversity, Dobzhansky-Muller incompatibility, hybridization, speciation },
doi = {},
url = {http://},
pmid = {},
journal = {Mycologia},
volume = {},
number = {},
pages = {},
abstract = {Abstract: Agaric fungi of the southern Appalachians including the Great Smoky Mountains National Park are often heterozygous for the rDNA internal transcribed spacer region (ITS) with >42% of collections showing some level of heterozygosity for indels and/or base-pair substitutions. For these collections, intra-individual haplotype divergence is typically less than 2%, but for 3% of these collections, intra-individual haplotype divergence exceeds that figure. We hypothesize that high intra-individual haplotype divergence is due to hybridization between agaric fungi with divergent haplotypes, possibly migrants from geographically isolated glacial refugia. Four species with relatively high haplotype divergence were examined: Armillaria mellea, Amanita citrina f. lavendula, Gymnopus dichrous and the Hygrocybe flavescens/chlorophana complex. The ITS region was sequenced, haplotypes of heterozygotes were resolved through cloning, and phylogenetic analyses were used to determine the outcome of hybridization events. Within Armillaria mellea and Amanita citrina f. lavendula, we found evidence of interbreeding and recombination. Within G. dichrous and H. flavescens/ chlorophana, hybrids were identified but there was no evidence for F2 or higher progeny in natural populations suggesting that the hybrid fruitbodies may be an evolutionary dead end and that the genetically divergent Mendelian populations from which they were derived are, in fact, different species. The association between levels of ITS haplotype divergence of less than 5% (Armillaria mellea = 2.6% excluding gaps; Amanita citrina f. lavendula = 3.3%) with the presence of putative recombinants and greater than 5% (Gymnopus dichrous=5.7%; Hygrocybe flavescens/chlorophana=14.1%) with apparent failure of F1 hybrids to produce F2 or higher progeny in populations may suggest a correlation between genetic distance and reproductive isolation. }
}
Taxa for tree 63488 of Study 14193

Citation title:
"Evolutionary consequences of putative intra- and interspecific hybridization in agaric fungi.".

Study name:
"Evolutionary consequences of putative intra- and interspecific hybridization in agaric fungi.".

This study is part of submission 14193
(Status: Published).
Taxa
Return to complete tree view
| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 1093220 |
Amanita afn citrina Japan AB015679 |
|
|
| 1093224 |
Amanita afn citrina Korea AF085483 |
|
|
| 1093231 |
Amanita afn citrina Korea AF085489 |
|
|
| 1093241 |
Amanita afn citrina USA GSM TENN61382 |
|
|
| 1093218 |
Amanita brunnescens AY789079 |
87326
|
1447463
|
| 1093230 |
Amanita citrina Austria AF085489 |
67700
|
3049939
|
| 1093248 |
Amanita citrina f gresia Japan AB015680 |
|
|
| 1093237 |
Amanita citrina f lavendula USA GSM CIF2005-311C1 |
|
|
| 1093211 |
Amanita citrina f lavendula USA GSM CIF2005-311C2 |
|
|
| 1093242 |
Amanita citrina f lavendula USA GSM CIF2005-311C3 |
|
|
| 1093213 |
Amanita citrina f lavendula USA GSM CIF2005-311C4 |
|
|
| 1093226 |
Amanita citrina f lavendula USA GSM TENN61704C1 |
|
|
| 1093210 |
Amanita citrina f lavendula USA GSM TENN61704C2 |
|
|
| 1093245 |
Amanita citrina f lavendula USA GSM TENN61704C3 |
|
|
| 1093249 |
Amanita citrina f lavendula USA GSM TENN61704C3b |
|
|
| 1093244 |
Amanita citrina f lavendula USA GSM TENN61704C4 |
|
|
| 1093246 |
Amanita citrina f lavendula USA GSM TENN61704C5 |
|
|
| 1093222 |
Amanita citrina f lavendula USA GSM TENN61710C1 |
235526
|
10227235
|
| 1093238 |
Amanita citrina f lavendula USA GSM TENN61710C2 |
|
|
| 1093219 |
Amanita citrina f lavendula USA GSM TENN61710C3 |
|
|
| 1093234 |
Amanita citrina f lavendula USA GSM TENN61710C4 |
|
|
| 1093243 |
Amanita citrina f lavendula USA GSM TENN61710C5 |
|
|
| 1093221 |
Amanita citrina f lavendula USA GSM TENN61710C6 |
|
|
| 1093229 |
Amanita flaviconia USA GSM LN2004-07-13-05 |
|
|
| 1093239 |
Amanita flaviconia USA GSM RT7-13-04B |
|
|
| 1093217 |
Amanita flaviconia USA North Carolina TENN61564 |
|
|
| 1093212 |
Amanita porphyria British Columbia EU597069 |
78358
|
3078693
|
| 1093214 |
Amanita porphyria Japan AB015677 |
78358
|
3078693
|
| 1093228 |
Amanita rubescens Russia LE216C1-2004 |
71933
|
3917452
|
| 1093240 |
Amanita rubescens Russia LE216C3-2004 |
71933
|
3917452
|
| 1093235 |
Amanita rubescens Russia LE259-2004 |
71933
|
3917452
|
| 1093236 |
Amanita rubescens Russia TENN62894 |
71933
|
3917452
|
| 1093225 |
Amanita rubescens Sweden TENN62894 |
71933
|
3917452
|
| 1093233 |
Amanita solaniolens TENN61557 |
|
3188732
|
| 1093247 |
uncultured Amanita AY656916 |
450289
|
|
| 1093209 |
uncultured Amanita Finland AJ633110 |
|
|
| 1093223 |
uncultured Amanita Italy DQ990869 |
|
|
| 1093215 |
uncultured Amanita Italy FJ210727 |
|
|
| 1093216 |
uncultured Amanita Italy GU256206 |
|
|
| 1093227 |
uncultured Amanita Michigan FJ715924 |
|
|
| 1093232 |
uncultured Amanita North Carolina EF619627 |
|
|