@ARTICLE{TreeBASE2Ref21965,
author = {Karen Hughes and Ronald Petersen and D. Jean Lodge and Sarah E. Bergemann and kendra baumgartner and Rodham E. Tulloss and Edgar Lickey and Joaquin Cifuentes},
title = {Evolutionary consequences of putative intra- and interspecific hybridization in agaric fungi.},
year = {2013},
keywords = {biodiversity, Dobzhansky-Muller incompatibility, hybridization, speciation },
doi = {},
url = {http://},
pmid = {},
journal = {Mycologia},
volume = {},
number = {},
pages = {},
abstract = {Abstract: Agaric fungi of the southern Appalachians including the Great Smoky Mountains National Park are often heterozygous for the rDNA internal transcribed spacer region (ITS) with >42% of collections showing some level of heterozygosity for indels and/or base-pair substitutions. For these collections, intra-individual haplotype divergence is typically less than 2%, but for 3% of these collections, intra-individual haplotype divergence exceeds that figure. We hypothesize that high intra-individual haplotype divergence is due to hybridization between agaric fungi with divergent haplotypes, possibly migrants from geographically isolated glacial refugia. Four species with relatively high haplotype divergence were examined: Armillaria mellea, Amanita citrina f. lavendula, Gymnopus dichrous and the Hygrocybe flavescens/chlorophana complex. The ITS region was sequenced, haplotypes of heterozygotes were resolved through cloning, and phylogenetic analyses were used to determine the outcome of hybridization events. Within Armillaria mellea and Amanita citrina f. lavendula, we found evidence of interbreeding and recombination. Within G. dichrous and H. flavescens/ chlorophana, hybrids were identified but there was no evidence for F2 or higher progeny in natural populations suggesting that the hybrid fruitbodies may be an evolutionary dead end and that the genetically divergent Mendelian populations from which they were derived are, in fact, different species. The association between levels of ITS haplotype divergence of less than 5% (Armillaria mellea = 2.6% excluding gaps; Amanita citrina f. lavendula = 3.3%) with the presence of putative recombinants and greater than 5% (Gymnopus dichrous=5.7%; Hygrocybe flavescens/chlorophana=14.1%) with apparent failure of F1 hybrids to produce F2 or higher progeny in populations may suggest a correlation between genetic distance and reproductive isolation. }
}
Taxa for tree 63491 of Study 14193

Citation title:
"Evolutionary consequences of putative intra- and interspecific hybridization in agaric fungi.".

Study name:
"Evolutionary consequences of putative intra- and interspecific hybridization in agaric fungi.".

This study is part of submission 14193
(Status: Published).
Taxa
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| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 1093372 |
Hygrocybe afn flavescens TENN60864C1 |
|
|
| 1093370 |
Hygrocybe afn flavescens TENN60864C2 |
|
|
| 1093340 |
Hygrocybe afn flavescens TENN60864C3 |
|
|
| 1093353 |
Hygrocybe afn flavescens TENN60864C5 |
|
|
| 1093375 |
Hygrocybe chlorophana DJL06TN16 |
521075
|
3230178
|
| 1093347 |
Hygrocybe chlorophana Denmark EU435148 |
521075
|
3230178
|
| 1093388 |
Hygrocybe chlorophana EU784301 |
521075
|
3230178
|
| 1093394 |
Hygrocybe chlorophana Hungary EU784329 |
521075
|
3230178
|
| 1093373 |
Hygrocybe chlorophana Hungary FM208855 |
521075
|
3230178
|
| 1093389 |
Hygrocybe chlorophana Hungary FM208856 |
521075
|
3230178
|
| 1093396 |
Hygrocybe chlorophana Hungary FM208858 |
521075
|
3230178
|
| 1093338 |
Hygrocybe chlorophana New York CMFR DJL NY11BC1 |
521075
|
3230178
|
| 1093359 |
Hygrocybe chlorophana New York DJL NY11BC2 |
521075
|
3230178
|
| 1093397 |
Hygrocybe chlorophana New York DJL NY11BC3 |
521075
|
3230178
|
| 1093351 |
Hygrocybe chlorophana New York DJL NY11BC5 |
521075
|
3230178
|
| 1093365 |
Hygrocybe chlorophana USA GSM DJL06NC113C1 |
521075
|
3230178
|
| 1093367 |
Hygrocybe chlorophana USA GSM DJL06NC113C3 |
521075
|
3230178
|
| 1093392 |
Hygrocybe chlorophana USA GSM DJL06NC113C4 |
521075
|
3230178
|
| 1093384 |
Hygrocybe chlorophana USA GSM DJL06NC113C5 |
521075
|
3230178
|
| 1093385 |
Hygrocybe chlorophana USA GSM DJL06TN16B |
521075
|
3230178
|
| 1093369 |
Hygrocybe chlorophana USA GSM DJL06TN34C1 |
521075
|
3230178
|
| 1093337 |
Hygrocybe chlorophana USA GSM DJL06TN34C2 |
521075
|
3230178
|
| 1093339 |
Hygrocybe chlorophana USA GSM DJL06TN45 |
521075
|
3230178
|
| 1093357 |
Hygrocybe chlorophana USA GSM DJL06TN46 |
521075
|
3230178
|
| 1093354 |
Hygrocybe chlorophana USA GSM DJL06TN47h1 |
521075
|
3230178
|
| 1093341 |
Hygrocybe chlorophana USA GSM DJL06TN47h2 |
521075
|
3230178
|
| 1093371 |
Hygrocybe chlorophana USA GSM TENN60277C1 |
521075
|
3230178
|
| 1093393 |
Hygrocybe chlorophana USA GSM TENN60277C2 |
521075
|
3230178
|
| 1093398 |
Hygrocybe chlorophana USA GSM TENN60277C3 |
521075
|
3230178
|
| 1093377 |
Hygrocybe chlorophana USA GSM TENN60277C4 |
521075
|
3230178
|
| 1093391 |
Hygrocybe chlorophana USA GSM TENN60277C5 |
521075
|
3230178
|
| 1093350 |
Hygrocybe chlorophana USA GSM TENN60572 |
521075
|
3230178
|
| 1093376 |
Hygrocybe chlorophana USA GSM TENN60682 |
521075
|
3230178
|
| 1093344 |
Hygrocybe chlorophana USA GSM TENN60942h1 |
521075
|
3230178
|
| 1093386 |
Hygrocybe chlorophana USA GSM TENN60942h2 |
521075
|
3230178
|
| 1093395 |
Hygrocybe chlorophana USA GSM TENN61457C1 |
521075
|
3230178
|
| 1093361 |
Hygrocybe chlorophana USA GSM TENN61457C2 |
521075
|
3230178
|
| 1093366 |
Hygrocybe chlorophana USA GSM TENN61457C3 |
521075
|
3230178
|
| 1093343 |
Hygrocybe chlorophana USA GSM TENN61457C5 |
521075
|
3230178
|
| 1093381 |
Hygrocybe chlorophana USA GSM TENN68017 |
521075
|
3230178
|
| 1093348 |
Hygrocybe flavescens TENN59943 |
566091
|
1618532
|
| 1093390 |
Hygrocybe flavescens TENN61923 |
566091
|
1618532
|
| 1093368 |
Hygrocybe flavescens USA GSM TENN60268 |
566091
|
1618532
|
| 1093383 |
Hygrocybe flavescens USA GSM TENN61897 |
566091
|
1618532
|
| 1093345 |
Hygrocybe flavescens USA GSM TENN68010 |
566091
|
1618532
|
| 1093363 |
Hygrocybe flavescens USA GSM TENN68016C3 |
566091
|
1618532
|
| 1093374 |
Hygrocybe flavescens USA GSM TENN68016C4 |
566091
|
1618532
|
| 1093352 |
Hygrocybe flavescens USA GSM TENN68016C5 |
566091
|
1618532
|
| 1093364 |
Hygrocybe flavescens USA GSM VPH71 |
566091
|
1618532
|
| 1093358 |
Hygrocybe flavescens Vermont DJL VT2C5 |
566091
|
1618532
|
| 1093380 |
Hygrocybe flavescens Vermont DJLVT2C2 |
566091
|
1618532
|
| 1093379 |
Hygrocybe flavescens Vermont DJLVT2C3 |
566091
|
1618532
|
| 1093378 |
Hygrocybe flavescens Vermont DJLVT2C4 |
566091
|
1618532
|
| 1093342 |
Hygrocybe glutinipes EU435149 |
521076
|
3180094
|
| 1093349 |
Hygrocybe glutinipes EU784309 |
521076
|
3180094
|
| 1093346 |
Hygrocybe glutinipes EU784312 |
521076
|
3180094
|
| 1093382 |
Hygrocybe hybrid TENN61898C5 |
|
|
| 1093360 |
Hygrocybe hybrid TENN61898C6 |
|
|
| 1093387 |
Hygrocybe hybrid TENN61898C8 |
|
|
| 1093355 |
Hygrocybe hybrid TENN61898c7 |
|
|
| 1093362 |
Hygrocybe vitellina EU784354 |
566106
|
3262909
|
| 1093356 |
Uncultured Hygrocybe North Carolina AY969935 |
|
|