@ARTICLE{TreeBASE2Ref22213,
author = {Mohammad Ziaur Rahman and Seiji Uematsu and Haruhisa Suga and koji Kageyama},
title = {Two varieties, Phytophthora nagaii var. nagaii and P. nagaii var. fragariaefolia, of a new Phytophthora species causing serious diseases of rose and strawberry, respectively, in Japan},
year = {2014},
keywords = {Fast growing. Phytophthora. Phylogeny. Rose. Strawberry.},
doi = {},
url = {http://},
pmid = {},
journal = {Journal of General Plant Pathology},
volume = {},
number = {},
pages = {},
abstract = {A new disease of rose was noticed in Chiba district of Japan in 1968 and the pathogen was primarily identified as Phytophthora megasperma based on morphological characteristics. Similar Phytophthora species was isolated again from Chiba, Kanagawa and Shizuoka districts, until 2004. P. megasperma is a complex species and some new species have been segregated from this complex species. On the other hand, several isolates were recovered recently from leaf, petiole, runner and crown rot of strawberry in Hokkaido in 2005 and morphologically and phylogenetically considered to be a new species. All the isolates were re-examined based on morphological study and multi-locus phylogenetic analyses including rDNA ITS regions, rDNA LSU, translation elongation factor 1-?, ?-tubulin and coxI genes. In the morphological study, both rose and strawberry isolates showed mostly similar characteristics and significantly differed from P. megasperma sensu stricto and other related Phytophthora species by its external proliferation, characteristic funnel shaped oogonia, predominantly paragynous and intercalary antheridia and fast growth, 10.5 mm/day at the optimum temperature, 28ºC. In the multi-locus phylogenetic tree, they formed distinct monophyletic group in clade 7 with strong bootstrap support, although there are some differences in the position of the rose and strawberry isolates. The results indicate that the rose and strawberry isolates will be the same species consisting of two varieties and designated here as Phytophthora nagaii var. nagaii and P. nagaii var. fragariaefolia.}
}
Taxa for Study 14497

Citation title:
"Two varieties, Phytophthora nagaii var. nagaii and P. nagaii var. fragariaefolia, of a new Phytophthora species causing serious diseases of rose and strawberry, respectively, in Japan".

Study name:
"Two varieties, Phytophthora nagaii var. nagaii and P. nagaii var. fragariaefolia, of a new Phytophthora species causing serious diseases of rose and strawberry, respectively, in Japan".

This study is part of submission 14497
(Status: Published).
Taxa
| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 1285544 |
Phytophthora cajani |
|
|
| 1285549 |
Phytophthora parvispora |
|
|
| 1285478 |
Phytophthora alni |
299391
|
5980772
|
| 1285517 |
Phytophthora alticola |
|
|
| 1285504 |
Phytophthora amnicola |
|
|
| 1285483 |
Phytophthora andina |
283009
|
5979217
|
| 1285480 |
Phytophthora aquimorbida |
611798
|
|
| 1285520 |
Phytophthora arecae |
129347
|
3102210
|
| 1285496 |
Phytophthora arenaria |
|
|
| 1285505 |
Phytophthora asparagi |
|
631358
|
| 1285501 |
Phytophthora austrocedri |
631361
|
|
| 1285533 |
Phytophthora bilorbang |
|
|
| 1153520 |
Phytophthora bisheria |
187986
|
5968394
|
| 1153596 |
Phytophthora boehmeriae |
109152
|
3151010
|
| 1285529 |
Phytophthora borealis |
|
|
| 1153574 |
Phytophthora botryosa |
129348
|
3214421
|
| 1153594 |
Phytophthora brassicae |
187813
|
3948732
|
| 1153593 |
Phytophthora cactorum |
29920
|
3102354
|
| 1153584 |
Phytophthora cajani |
129349
|
3199266
|
| 1153565 |
Phytophthora cambivora |
53983
|
3145584
|
| 1285530 |
Phytophthora capensis |
|
|
| 1153563 |
Phytophthora capsici |
4784
|
3151703
|
| 1153532 |
Phytophthora captiosa |
360400
|
9733649
|
| 1285497 |
Phytophthora castitis |
|
|
| 1285525 |
Phytophthora chrysanthemi |
638948
|
|
| 1285524 |
Phytophthora cichorii |
|
|
| 1153595 |
Phytophthora cinnamomi |
4785
|
3152472
|
| 1153548 |
Phytophthora cinnamomi var parvispora |
134458
|
3232803
|
| 1285543 |
Phytophthora cinnamomi var robinae |
|
|
| 1285508 |
Phytophthora cinnamomi var robiniae |
|
3948734
|
| 1285493 |
Phytophthora citricola |
53984
|
3152527
|
| 1285479 |
Phytophthora citrophthora |
4793
|
3145785
|
| 1153528 |
Phytophthora clandestina |
89334
|
3022859
|
| 1153581 |
Phytophthora colocasiae |
129350
|
3129699
|
| 1285532 |
Phytophthora constricta |
|
|
| 1153578 |
Phytophthora cryptogea |
4786
|
3129314
|
| 1153537 |
Phytophthora cuyabensis |
445396
|
|
| 1285511 |
Phytophthora dauci |
|
|
| 1153550 |
Phytophthora drechsleri |
4794
|
3146142
|
| 1285484 |
Phytophthora elongata |
|
|
| 1153545 |
Phytophthora erythroseptica |
111171
|
3129370
|
| 1153557 |
Phytophthora europaea |
180900
|
3370049
|
| 1153559 |
Phytophthora fallax |
360399
|
9733652
|
| 1285512 |
Phytophthora fluvialis |
|
|
| 1153569 |
Phytophthora foliorum |
415976
|
10330402
|
| 1153577 |
Phytophthora fragariae |
53985
|
3172451
|
| 1285528 |
Phytophthora frigida |
|
|
| 1285506 |
Phytophthora gallica |
359324
|
5985485
|
| 1285481 |
Phytophthora gemini |
|
|
| 1285536 |
Phytophthora gibbosa |
|
|
| 1153554 |
Phytophthora glovera |
132615
|
5991726
|
| 1153516 |
Phytophthora gonapodyides |
78237
|
3146561
|
| 1285510 |
Phytophthora gregata |
|
|
| 1285491 |
Phytophthora hedraiandra |
295481
|
5980485
|
| 1153591 |
Phytophthora heveae |
129351
|
3146693
|
| 1153524 |
Phytophthora hibernalis |
175300
|
3156512
|
| 1285514 |
Phytophthora himalsilva |
|
|
| 1153561 |
Phytophthora humicola |
129352
|
3022860
|
| 1285526 |
Phytophthora hydropathica |
565288
|
|
| 1153552 |
Phytophthora idaei |
53986
|
3235784
|
| 1153566 |
Phytophthora ilicis |
89335
|
3184327
|
| 1153538 |
Phytophthora infestans |
4787
|
3871566
|
| 1285531 |
Phytophthora inflata |
129353
|
3172453
|
| 1153604 |
Phytophthora insolita |
127442
|
3029151
|
| 1153529 |
Phytophthora inundata |
244122
|
3996363
|
| 1153585 |
Phytophthora ipomoeae |
283007
|
3369634
|
| 1153521 |
Phytophthora iranica |
67592
|
3199272
|
| 1285516 |
Phytophthora irrigata |
565287
|
|
| 1153573 |
Phytophthora katsurae |
129354
|
3199274
|
| 1153544 |
Phytophthora kernoviae |
325452
|
5983343
|
| 1285490 |
Phytophthora lactucae |
|
|
| 1285519 |
Phytophthora lacustris |
|
|
| 1285499 |
Phytophthora lateralis |
129355
|
3172454
|
| 1285494 |
Phytophthora litchii |
|
|
| 1285538 |
Phytophthora litoralis |
|
|
| 1153536 |
Phytophthora macrochlamydospora |
67591
|
3229537
|
| 1153542 |
Phytophthora meadii |
192975
|
3036062
|
| 1285500 |
Phytophthora medicaginis |
54510
|
3041871
|
| 1153599 |
Phytophthora megakarya |
4795
|
3199276
|
| 1153592 |
Phytophthora megasperma |
4788
|
3158893
|
| 1153531 |
Phytophthora melonis |
120023
|
3199277
|
| 1285482 |
Phytophthora mengei |
658426
|
|
| 1153526 |
Phytophthora mexicana |
459882
|
3147289
|
| 1285534 |
Phytophthora mirabilis |
129356
|
3042176
|
| 1285507 |
Phytophthora mississippi |
|
|
| 1285498 |
Phytophthora morindae |
581215
|
|
| 1153589 |
Phytophthora multivesiculata |
129357
|
3284004
|
| 1153583 |
Phytophthora multivora |
596104
|
|
| 1285551 |
Phytophthora nagai var fragariaefolia CH05NSU21 |
|
|
| 1285553 |
Phytophthora nagai var nagaii CH95PHR16 |
|
|
| 1285547 |
Phytophthora nagaii avr nagaii CH04PHR11 |
|
|
| 1285546 |
Phytophthora nagaii avr nagaii CH95PHR17 |
|
|
| 1285550 |
Phytophthora nagaii var fgragariaefolia HSP504 |
|
|
| 1285541 |
Phytophthora nagaii var fragariaefoila HSP502 |
|
|
| 1285542 |
Phytophthora nagaii var fragariaefoilia CH05MT11 |
|
|
| 1153587 |
Phytophthora nagaii var fragariaefolia CH05MT11 |
|
|
| 1153541 |
Phytophthora nagaii var fragariaefolia CH05MT31 |
|
|
| 1153588 |
Phytophthora nagaii var fragariaefolia CH05MT40 |
|
|
| 1153597 |
Phytophthora nagaii var fragariaefolia CH05NSU11 |
|
|
| 1153547 |
Phytophthora nagaii var fragariaefolia CH05NSU21 |
|
|
| 1153586 |
Phytophthora nagaii var fragariaefolia CH05NSU31 |
|
|
| 1153600 |
Phytophthora nagaii var fragariaefolia HSP501 |
|
|
| 1153530 |
Phytophthora nagaii var fragariaefolia HSP502 |
|
|
| 1153527 |
Phytophthora nagaii var fragariaefolia HSP503 |
|
|
| 1153519 |
Phytophthora nagaii var fragariaefolia HSP504 |
|
|
| 1153590 |
Phytophthora nagaii var fragariaefolia HSP505 |
|
|
| 1153553 |
Phytophthora nagaii var fragariaefolia HSP506 |
|
|
| 1285548 |
Phytophthora nagaii var nagaii CH95PHR16 |
|
|
| 1153535 |
Phytophthora nagaii var nagaii CH00MKR1 |
|
|
| 1153580 |
Phytophthora nagaii var nagaii CH00MKR2 |
|
|
| 1153556 |
Phytophthora nagaii var nagaii CH02PHR1 |
|
|
| 1153546 |
Phytophthora nagaii var nagaii CH04PHR11 |
|
|
| 1153601 |
Phytophthora nagaii var nagaii CH04PHR12 |
|
|
| 1153525 |
Phytophthora nagaii var nagaii CH94PHR1 |
|
|
| 1153562 |
Phytophthora nagaii var nagaii CH95PHR10 |
|
|
| 1153603 |
Phytophthora nagaii var nagaii CH95PHR16 |
|
|
| 1153551 |
Phytophthora nagaii var nagaii CH95PHR17 |
|
|
| 1153534 |
Phytophthora nagaii var nagaii CH97PHR1 |
|
|
| 1285539 |
Phytophthora nagaii var nagaii P A |
|
|
| 1285540 |
Phytophthora nagaii var nagaii P B |
|
|
| 1153558 |
Phytophthora nagaii var nagaii PA |
|
|
| 1153568 |
Phytophthora nagaii var nagaii PB |
|
|
| 1285545 |
Phytophthora nagaii var nagaii megasperma P B |
|
|
| 1153523 |
Phytophthora nemorosa |
239968
|
4027243
|
| 1153576 |
Phytophthora nicotianae |
4790
|
3098392
|
| 1153579 |
Phytophthora niederhauserii |
266018
|
5993497
|
| 1285485 |
Phytophthora obscura |
|
|
| 1153515 |
Phytophthora palmivora |
4796
|
3098523
|
| 1285487 |
Phytophthora parsiana |
544909
|
|
| 1285518 |
Phytophthora parsley |
|
|
| 1285503 |
Phytophthora parvispora |
540036
|
|
| 1153555 |
Phytophthora phaseoli |
129358
|
3098419
|
| 1285515 |
Phytophthora pini |
658425
|
3098300
|
| 1285477 |
Phytophthora pinifolia |
538568
|
|
| 1285488 |
Phytophthora pisi |
|
|
| 1153518 |
Phytophthora pistaciae |
174576
|
3362453
|
| 1285527 |
Phytophthora plurivora |
639000
|
|
| 1153570 |
Phytophthora porri |
129359
|
3161723
|
| 1153543 |
Phytophthora primulae |
129360
|
3184329
|
| 1153571 |
Phytophthora pseudosyringae |
221518
|
4028313
|
| 1153582 |
Phytophthora pseudotsugae |
53987
|
3024131
|
| 1153540 |
Phytophthora psychrophila |
180901
|
3370051
|
| 1285492 |
Phytophthora quercetorum |
459883
|
|
| 1153567 |
Phytophthora quininea |
134455
|
3172456
|
| 1153549 |
Phytophthora ramorum |
164328
|
3362768
|
| 1285486 |
Phytophthora richardiae |
127443
|
3162627
|
| 1285535 |
Phytophthora riparia |
|
|
| 1285552 |
Phytophthora robinae |
|
|
| 1285521 |
Phytophthora rosacearum |
244167
|
|
| 1285509 |
Phytophthora rubi |
129364
|
1359909
|
| 1153575 |
Phytophthora sansomea |
358102
|
5985454
|
| 1285489 |
Phytophthora sansomeana |
555429
|
|
| 1153598 |
Phytophthora sinensis |
129361
|
3027615
|
| 1285537 |
Phytophthora siskiyouensis |
436079
|
10340845
|
| 1153522 |
Phytophthora sojae |
67593
|
3184330
|
| 1153602 |
Phytophthora sp kelmania |
|
|
| 1153539 |
Phytophthora syringae |
67594
|
3098457
|
| 1285502 |
Phytophthora taxon kelmania |
|
|
| 1285495 |
Phytophthora taxon niederhauserii |
|
|
| 1153572 |
Phytophthora tentaculata |
129362
|
3232802
|
| 1285513 |
Phytophthora thermophila |
|
|
| 1153533 |
Phytophthora trifolii |
54511
|
3041872
|
| 1285522 |
Phytophthora tropicalis |
137729
|
3284575
|
| 1153560 |
Phytophthora uliginosa |
180902
|
3370050
|
| 1153564 |
Phytophthora vignae |
67595
|
3184331
|
| 1285523 |
Phytopthora polonica |
|
|
| 1153517 |
Pythium vexans |
42099
|
3081483
|