@ARTICLE{TreeBASE2Ref22638,
author = {Phillip Ray Hollingsworth and Andrew M Simons and James A Fordyce and C Darrin Hulsey},
title = {Explosive diversification following a benthic to pelagic shift in freshwater fishes},
year = {2013},
keywords = {Cyprinidae; divergence times; open adaptive zone; radiation},
doi = {},
url = {http://},
pmid = {},
journal = {BMC Evolutionary Biology},
volume = {},
number = {},
pages = {},
abstract = {Background: Interspecific divergence along a benthic to pelagic habitat axis is ubiquitous in freshwater fishes inhabiting lentic environments. In this study, we examined the influence of this habitat axis on the macroevolution of a diverse, lotic radiation using mtDNA and nDNA phylogenies for eastern North America?s most species-rich freshwater fish clade, the open posterior myodome (OPM) cyprinids. We used ancestral state reconstruction to identify the earliest benthic to pelagic transition in this group and generated fossil-calibrated estimates of when this shift occurred. This transition could have represented evolution into a novel adaptive zone, and therefore, we tested for a period of accelerated lineage accumulation after this historical habitat shift.
Results: Ancestral state reconstructions inferred a similar and concordant region of our mtDNA and nDNA based gene trees as representing the shift from benthic to pelagic habitats in the OPM clade. Two independent tests conducted on each gene tree suggested an increased diversification rate after this inferred habitat transition. Furthermore, lineage through time analyses indicated rapid early cladogenesis in the clade arising after the benthic to pelagic shift.
Conclusions: A burst of diversification followed the earliest benthic to pelagic transition during the radiation of OPM cyprinids in eastern North America. As such, the benthic/pelagic habitat axis has likely influenced the generation of biodiversity across disparate freshwater ecosystems.
}
}
Taxa for tree 89826 of Study 15034

Citation title:
"Explosive diversification following a benthic to pelagic shift in freshwater fishes".

Study name:
"Explosive diversification following a benthic to pelagic shift in freshwater fishes".

This study is part of submission 15034
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
1975002 |
Caldanaerobacter subterraneus Pacificus_1 |
111823
|
3605093
|
1975003 |
Caldanaerobacter subterraneus Pacificus_2 |
111823
|
3605093
|
1975001 |
Caldanaerobacter subterraneus Pacificus_3 |
111823
|
3605093
|
1974997 |
Caldanaerobacter subterraneus Pacificus_4 |
111823
|
3605093
|
1974999 |
Caldanaerobacter subterraneus Tengcongensis 1 |
111823
|
3605093
|
1975016 |
Caldanaerobacter subterraneus Tengcongensis 2 |
111823
|
3605093
|
1975006 |
Caldanaerobacter subterraneus Tengcongensis 3 |
111823
|
3605093
|
1974995 |
Caldanaerobacter subterraneus Tengcongensis 4 |
111823
|
3605093
|
1975013 |
Caldanaerobacter subterraneus Yonseiensis_1 |
111823
|
3605093
|
1975012 |
Caldanaerobacter subterraneus Yonseiensis_2 |
111823
|
3605093
|
1975018 |
Caldanaerobacter subterraneus Yonseiensis_3 |
111823
|
3605093
|
1975008 |
Caldanaerobacter subterraneus subsp. subterraneus |
111823
|
10169701
|
1975021 |
Caldanaerobacter uzonensis |
447594
|
|
1975015 |
Carboxydothermus hydrogenoformans Z2901 |
129958
|
2554732
|
1975010 |
Desulfotomaculum kuznetsovii |
58135
|
2555407
|
1974998 |
Geobacillus thermoglucosidasius |
1426
|
2555908
|
1974994 |
Moorella thermoacetica |
1525
|
2557092
|
1975014 |
Rhodospirillum rubrum ATCC 11170 |
269796
|
10245351
|
1974993 |
Thermacetogenium phaeum |
85874
|
2559546
|
1975011 |
Thermoanaerobacter brockii subsp. finnii |
29325
|
10136779
|
1975019 |
Thermoanaerobacter italicus |
108150
|
2559572
|
1975004 |
Thermoanaerobacter mathranii |
57481
|
2559574
|
1975005 |
Thermoanaerobacter pseudethanolicus 1 |
496866
|
|
1974991 |
Thermoanaerobacter pseudethanolicus 2 |
496866
|
|
1975000 |
Thermoanaerobacter sp. YS13 THYS13_06880 |
1755
|
10128689
|
1975017 |
Thermoanaerobacter sp. YS13 THYS13_15330 |
1755
|
10128689
|
1975007 |
Thermoanaerobacter sp. YS13 THYS13_19550 |
1755
|
10128689
|
1974992 |
Thermoanaerobacter sp. YS13 THYS13_RS09555 |
1755
|
10128689
|
1975020 |
Thermoanaerobacter sp. YS13 THYS13_RS09690 |
1755
|
10128689
|
1975009 |
Thermoanaerobacter sp. YS13_THYS13_19280 |
1755
|
10128689
|
1974996 |
Thermoanaerobacter wiegelii |
46354
|
2559581
|