@ARTICLE{TreeBASE2Ref22638,
author = {Phillip Ray Hollingsworth and Andrew M Simons and James A Fordyce and C Darrin Hulsey},
title = {Explosive diversification following a benthic to pelagic shift in freshwater fishes},
year = {2013},
keywords = {Cyprinidae; divergence times; open adaptive zone; radiation},
doi = {},
url = {http://},
pmid = {},
journal = {BMC Evolutionary Biology},
volume = {},
number = {},
pages = {},
abstract = {Background: Interspecific divergence along a benthic to pelagic habitat axis is ubiquitous in freshwater fishes inhabiting lentic environments. In this study, we examined the influence of this habitat axis on the macroevolution of a diverse, lotic radiation using mtDNA and nDNA phylogenies for eastern North America?s most species-rich freshwater fish clade, the open posterior myodome (OPM) cyprinids. We used ancestral state reconstruction to identify the earliest benthic to pelagic transition in this group and generated fossil-calibrated estimates of when this shift occurred. This transition could have represented evolution into a novel adaptive zone, and therefore, we tested for a period of accelerated lineage accumulation after this historical habitat shift.
Results: Ancestral state reconstructions inferred a similar and concordant region of our mtDNA and nDNA based gene trees as representing the shift from benthic to pelagic habitats in the OPM clade. Two independent tests conducted on each gene tree suggested an increased diversification rate after this inferred habitat transition. Furthermore, lineage through time analyses indicated rapid early cladogenesis in the clade arising after the benthic to pelagic shift.
Conclusions: A burst of diversification followed the earliest benthic to pelagic transition during the radiation of OPM cyprinids in eastern North America. As such, the benthic/pelagic habitat axis has likely influenced the generation of biodiversity across disparate freshwater ecosystems.
}
}
Taxa for tree 89827 of Study 15034
Citation title:
"Explosive diversification following a benthic to pelagic shift in freshwater fishes".
Study name:
"Explosive diversification following a benthic to pelagic shift in freshwater fishes".
This study is part of submission 15034
(Status: Published).
Taxa
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| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 1975036 |
Caldanaerobacter subterraneus pacificus_WP_009610668 |
111823
|
3605093
|
| 1975040 |
Caldanaerobacter subterraneus tengcongensis_NP_623304.1 |
111823
|
3605093
|
| 1975044 |
Caldanaerobacter subterraneus yonseiensis_ERM92236.1 |
111823
|
3605093
|
| 1975033 |
Carboxydothermus hydrogenoformans WP_011343033.1 |
129958
|
2554732
|
| 1975029 |
Carboxydothermus pertinax BAN17001 |
|
|
| 1975026 |
Desulfobacterium CBX30159.1 |
|
|
| 1975030 |
Desulfotomaculum acetoxidans YP_003191763.1 |
58138
|
2555397
|
| 1975025 |
Desulfotomaculum kuznetsovii YP_004518100.1 |
58135
|
2555407
|
| 1975023 |
Geobacillus sp. YP_003989188.1 |
|
|
| 1975024 |
Geobacillus thermoglucosidasius EID44395.1 |
1426
|
2555908
|
| 1975031 |
Geobacillus thermoglucosidasius YP_004587920.1 |
1426
|
2555908
|
| 1975039 |
Methanosaeta harundinacea YP_005920613.1 |
301375
|
5980979
|
| 1975032 |
Methanosaeta thermophila YP_843756.1 |
2224
|
10122610
|
| 1975027 |
Methanosarcina acetivorans NP_618172.1 |
2214
|
2556834
|
| 1975043 |
Methanosarcina barkeri YP_306974.1 |
2208
|
2556835
|
| 1975042 |
Methanosarcina mazei NP_632145.1 |
2209
|
2556837
|
| 1975035 |
Methanosarcina mazei YP_007488856.1 |
2209
|
2556837
|
| 1975037 |
Moorella thermoacetica YP_430060.1 |
1525
|
2557092
|
| 1975022 |
Rhodospirillum rubrum YP_426515.1 |
1085
|
3865983
|
| 1975028 |
Thermacetogenium phaeum YP_006919310.1 |
85874
|
2559546
|
| 1975038 |
Thermoanaerobacter sp. YS13 THYS13_RS04700 |
1755
|
10128689
|
| 1975034 |
Thermococcus onnurineus TON_1018 |
342948
|
|
| 1975041 |
Thermodesulfobacterium thermophilum WP_022856204.1 |
886
|
3327616
|
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