@ARTICLE{TreeBASE2Ref22638,
author = {Phillip Ray Hollingsworth and Andrew M Simons and James A Fordyce and C Darrin Hulsey},
title = {Explosive diversification following a benthic to pelagic shift in freshwater fishes},
year = {2013},
keywords = {Cyprinidae; divergence times; open adaptive zone; radiation},
doi = {},
url = {http://},
pmid = {},
journal = {BMC Evolutionary Biology},
volume = {},
number = {},
pages = {},
abstract = {Background: Interspecific divergence along a benthic to pelagic habitat axis is ubiquitous in freshwater fishes inhabiting lentic environments. In this study, we examined the influence of this habitat axis on the macroevolution of a diverse, lotic radiation using mtDNA and nDNA phylogenies for eastern North America?s most species-rich freshwater fish clade, the open posterior myodome (OPM) cyprinids. We used ancestral state reconstruction to identify the earliest benthic to pelagic transition in this group and generated fossil-calibrated estimates of when this shift occurred. This transition could have represented evolution into a novel adaptive zone, and therefore, we tested for a period of accelerated lineage accumulation after this historical habitat shift.
Results: Ancestral state reconstructions inferred a similar and concordant region of our mtDNA and nDNA based gene trees as representing the shift from benthic to pelagic habitats in the OPM clade. Two independent tests conducted on each gene tree suggested an increased diversification rate after this inferred habitat transition. Furthermore, lineage through time analyses indicated rapid early cladogenesis in the clade arising after the benthic to pelagic shift.
Conclusions: A burst of diversification followed the earliest benthic to pelagic transition during the radiation of OPM cyprinids in eastern North America. As such, the benthic/pelagic habitat axis has likely influenced the generation of biodiversity across disparate freshwater ecosystems.
}
}
Taxa for tree 89892 of Study 15034
Citation title:
"Explosive diversification following a benthic to pelagic shift in freshwater fishes".
Study name:
"Explosive diversification following a benthic to pelagic shift in freshwater fishes".
This study is part of submission 15034
(Status: Published).
Taxa
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| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 1977739 |
Caldanaerobacter subterraneus pacificus_CDSM653_0105 |
111823
|
3605093
|
| 1977746 |
Caldanaerobacter subterraneus tengcongensis_NP_621827.1 |
111823
|
3605093
|
| 1977744 |
Caldanaerobacter subterraneus yonseiensis_ERM91338.1 |
111823
|
3605093
|
| 1977747 |
Coprothermobacter platensis WP_018962513.1 |
108819
|
2555101
|
| 1977750 |
Thermoanaerobacter ethanolicus WP_003868941.1 |
1757
|
2559570
|
| 1977737 |
Thermoanaerobacter indiensis WP_019907186.1 |
|
|
| 1977749 |
Thermoanaerobacter italicus YP_003477426.1 |
108150
|
2559572
|
| 1977743 |
Thermoanaerobacter mathranii YP_003677322.1 |
57481
|
2559574
|
| 1977741 |
Thermoanaerobacter siderophilus WP_006569905.1 |
106578
|
2559575
|
| 1977748 |
Thermoanaerobacter thermohydrosulfuricus WP_004399987.1 |
1516
|
2559580
|
| 1977742 |
Thermoanaerobacter wiegelii YP_004818932.1 |
46354
|
2559581
|
| 1977740 |
Thermoanaerobacterium saccharolyticum YP_006391302.1 |
28896
|
2559586
|
| 1977745 |
Thermoanaerobacterium thermosaccharolyticum YP_003850794.1 |
1517
|
2559587
|
| 1977738 |
Thermoanaerobacterium thermosaccharolyticum YP_007297552.1 |
1517
|
2559587
|
| 1977751 |
Thermoanaerobacterium xylanolyticum YP_004469845.1 |
29329
|
2559589
|
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