@ARTICLE{TreeBASE2Ref22638,
author = {Phillip Ray Hollingsworth and Andrew M Simons and James A Fordyce and C Darrin Hulsey},
title = {Explosive diversification following a benthic to pelagic shift in freshwater fishes},
year = {2013},
keywords = {Cyprinidae; divergence times; open adaptive zone; radiation},
doi = {},
url = {http://},
pmid = {},
journal = {BMC Evolutionary Biology},
volume = {},
number = {},
pages = {},
abstract = {Background: Interspecific divergence along a benthic to pelagic habitat axis is ubiquitous in freshwater fishes inhabiting lentic environments. In this study, we examined the influence of this habitat axis on the macroevolution of a diverse, lotic radiation using mtDNA and nDNA phylogenies for eastern North America?s most species-rich freshwater fish clade, the open posterior myodome (OPM) cyprinids. We used ancestral state reconstruction to identify the earliest benthic to pelagic transition in this group and generated fossil-calibrated estimates of when this shift occurred. This transition could have represented evolution into a novel adaptive zone, and therefore, we tested for a period of accelerated lineage accumulation after this historical habitat shift.
Results: Ancestral state reconstructions inferred a similar and concordant region of our mtDNA and nDNA based gene trees as representing the shift from benthic to pelagic habitats in the OPM clade. Two independent tests conducted on each gene tree suggested an increased diversification rate after this inferred habitat transition. Furthermore, lineage through time analyses indicated rapid early cladogenesis in the clade arising after the benthic to pelagic shift.
Conclusions: A burst of diversification followed the earliest benthic to pelagic transition during the radiation of OPM cyprinids in eastern North America. As such, the benthic/pelagic habitat axis has likely influenced the generation of biodiversity across disparate freshwater ecosystems.
}
}
Taxa for tree 89895 of Study 15034
Citation title:
"Explosive diversification following a benthic to pelagic shift in freshwater fishes".
Study name:
"Explosive diversification following a benthic to pelagic shift in freshwater fishes".
This study is part of submission 15034
(Status: Published).
Taxa
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| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 1977786 |
Caldanaerobacter subterraneus pacificus_CDSM653_0932 |
111823
|
3605093
|
| 1977792 |
Caldanaerobacter subterraneus tengcongensis_NP_622545.1 |
111823
|
3605093
|
| 1977798 |
Caldanaerobacter subterraneus yonseiensis_ERM93009.1 |
111823
|
3605093
|
| 1977795 |
Coprothermobacter platensis WP_018962528.1 |
108819
|
2555101
|
| 1977797 |
Coprothermobacter proteolyticus YP_002246550.1 |
35786
|
2555102
|
| 1977796 |
Thermoanaerobacter WP_004401669.1 |
|
|
| 1977794 |
Thermoanaerobacter ethanolicus WP_003870980.1 |
1757
|
2559570
|
| 1977783 |
Thermoanaerobacter italicus YP_003476669.1 |
108150
|
2559572
|
| 1977790 |
Thermoanaerobacter pseudethanolicus YP_001665443.1 |
496866
|
|
| 1977785 |
Thermoanaerobacter siderophilus WP_006570152.1 |
106578
|
2559575
|
| 1977782 |
Thermoanaerobacter sp. YP_001663747.1 |
1755
|
10128689
|
| 1977793 |
Thermoanaerobacter wiegelii YP_004819692.1 |
46354
|
2559581
|
| 1977787 |
Thermoanaerobacterium aotearoense ETO38913.1 |
47490
|
2559584
|
| 1977791 |
Thermoanaerobacterium saccharolyticum YP_006392730.1 |
28896
|
2559586
|
| 1977784 |
Thermoanaerobacterium thermosaccharolyticum YP_003851723.1 |
1517
|
2559587
|
| 1977789 |
Thermoanaerobacterium thermosaccharolyticum YP_007298420.1 |
1517
|
2559587
|
| 1977788 |
Thermoanaerobacterium xylanolyticum YP_004471284.1 |
29329
|
2559589
|
Citation
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