@ARTICLE{TreeBASE2Ref26210,
author = {Melissa Mardones-Hidalgo and Tanja Trampe and Sophie Oster and Monica Elliott and Hector Raul Urbina and Imke Schmitt and Meike Piepenbring},
title = {Phylogeny of the order Phyllachorales (Ascomycota, Sordariomycetes): among and within order relationships based on five molecular loci},
year = {2017},
keywords = {tar spot fungi Phyllachoraceae Phaeochoraceae Telimenaceae Phyllachora Telimena },
doi = {10.3767/persoonia.2017.39.04},
url = {http://http://www.ingentaconnect.com/content/nhn/pimj/pre-prints/content-nbc-persoonia-0407},
pmid = {},
journal = {Persoonia},
volume = {39},
number = {},
pages = {74--90},
abstract = {Abstract The order Phyllachorales (Pezizomycotina, Ascomycota) is a group of biotrophic, obligate plant parasitic
fungi with a tropical distribution and high host specificity. Traditionally two families are recognised within this order:
Phyllachoraceae and Phaeochoraceae, based mostly on morphological and host characteristics. Currently, the
position of the order within the class Sordariomycetes is inconclusive, as well as the monophyly of the order, and
its internal phylogenetic structure. Here we present a phylogeny of the order Phyllachorales based on sequence
data of 29 species with a broad host range resulting from a wide geographical sampling. We inferred Maximum
Likelihood and Bayesian phylogenies from data of five DNA regions: nrLSU rDNA, nrSSU rDNA, ITS rDNA, and
the protein coding genes RPB2, and TEF1. We found that the order Phyllachorales is monophyletic and related
to members of the subclass Sordariomycetidae within Sordariomycetes. Within the order, members of the family
Phaeochoraceae form a monophyletic group, and the family Phyllachoraceae is split into two lineages. Maximum
Likelihood ancestral state reconstructions indicate that the ancestor of Phyllachorales had a monocotyledonous
host plant, immersed perithecia, and a black stroma. Alternative states of these characters evolved multiple times
independently within the order. Based on our results we redefine the family Phyllachoraceae and propose the new
family Telimenaceae with Telimena erythrinae as type species, resulting in three families in the order. Species of
Telimena spp. occur in several monocotyledonous and eudicotyledonous host plants except Poaceae, and generally
have enlarged black pseudostroma around the perithecia, a character not present in species of Phyllachoraceae.}
}
Taxa for Study 19724

Citation title:
"Phylogeny of the order Phyllachorales (Ascomycota, Sordariomycetes): among and within order relationships based on five molecular loci".

Study name:
"Phylogeny of the order Phyllachorales (Ascomycota, Sordariomycetes): among and within order relationships based on five molecular loci".

This study is part of submission 19724
(Status: Published).
Taxa
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
2403264 |
Aniptodera chesapeakensis |
45808
|
2642498
|
2403298 |
Balansia henningsiana |
45230
|
3175707
|
2403300 |
Bionectria ochroleuca |
29856
|
3283546
|
2403313 |
Bombardia bombarda |
252184
|
3035098
|
2403295 |
Buergenerula spartinae |
174300
|
3872300
|
2403318 |
Calosphaeria pulchella |
312312
|
3162026
|
2403294 |
Camarops amorpha |
314024
|
3190177
|
2403261 |
Camarops microspora |
42371
|
3159093
|
2403343 |
Camarops microspora CBS649.92 |
42371
|
3159093
|
2403250 |
Camarops tubulina |
252145
|
3165473
|
2403268 |
Camarops ustulinoides |
252146
|
3190185
|
2403329 |
Camarops ustulinoides DEH 2164 |
|
|
2403325 |
Camarotella costaricensis MM-21 |
|
|
2403242 |
Camarotella costaricensis MM-149 |
|
|
2403256 |
Camarotella costaricensis MM-21 |
|
|
2403348 |
Camarotella sp MM-27 |
|
|
2403243 |
Camarotella sp. MM-27 |
|
|
2403248 |
Cercophora coprophila |
314027
|
3190552
|
2403306 |
Chaetosphaerella phaeostroma |
252169
|
3190933
|
2403308 |
Chrysoporthe cubensis |
305400
|
5981323
|
2403355 |
Coccodiella melastomatum CMU78543 |
54964
|
2831225
|
2403314 |
Coccodiella miconiae |
|
|
2403340 |
Coccodiella miconiae ppMP1342 |
|
|
2403269 |
Coccodiella miconiicola |
|
|
2403341 |
Coccodiella miconiicola TH571 |
|
|
2403334 |
Coccodiella sp MM-165 |
|
|
2403276 |
Coccodiella sp. MM-165 |
|
|
2403332 |
Coccodiella toledoi U78544 |
54965
|
2831236
|
2403293 |
Cocoicola californica F59034 |
|
|
2403312 |
Cocoicola californica F59038 |
|
|
2403299 |
Cordyceps cardinalis |
224370
|
5972689
|
2403277 |
Cryphonectria parasitica |
5116
|
3872340
|
2403271 |
Cryptosporella hypodermia |
187226
|
1449016
|
2403257 |
Diaporthe eres |
83184
|
3079478
|
2403253 |
Diatrype disciformis |
42366
|
3131008
|
2403288 |
Eutypa lata |
97096
|
3052741
|
2403280 |
Falcocladium multivesiculatum |
467985
|
3234302
|
2403254 |
Falcocladium sphaeropedunculatum |
467986
|
3282307
|
2403309 |
Gelasinospora tetrasperma |
94610
|
3148725
|
2403270 |
Glomerella cingulata |
5457
|
3140805
|
2403258 |
Gnomonia gnomon |
187234
|
3035901
|
2403265 |
Graphium penicillioides |
67620
|
3113022
|
2403259 |
Halosphaeria appendiculata |
45812
|
3872225
|
2403272 |
Hypocrea lutea |
29861
|
3158353
|
2403290 |
Kylindria peruamazonensis |
|
3233499
|
2403278 |
Lasiosphaeria ovina |
92902
|
1450513
|
2403296 |
Leotia lubrica |
39932
|
3076237
|
2403281 |
Melanospora tiffanii |
152779
|
5964314
|
2403283 |
Melanospora zamiae |
40617
|
3112495
|
2403310 |
Microascus trigonosporus |
36921
|
3165370
|
2403305 |
Monilochaetes infuscans |
|
3053488
|
2403244 |
Ophioceras dolichostomum |
367097
|
3058102
|
2403275 |
Ophioceras leptosporum |
85912
|
3030428
|
2403291 |
Ophiocordyceps irangiensis |
153661
|
3207000
|
2403247 |
Ophiodothella vaccinii |
54897
|
2830895
|
2403315 |
Ophiostoma piliferum |
38032
|
3871612
|
2403263 |
Ophiostoma stenoceras |
5173
|
3164103
|
2403304 |
Papulosa amerospora |
101488
|
3920626
|
2403344 |
Phyllachora graminis AF064051 |
101486
|
2830128
|
2403354 |
Phyllachora graminis AF257111 |
101486
|
2830128
|
2403333 |
Phyllachora graminis DAOM240981 |
101486
|
2830128
|
2403353 |
Phyllachora graminis MM-166 |
101486
|
2830128
|
2403352 |
Phyllachora graminis RoKi3084 |
101486
|
2830128
|
2403266 |
Phyllachora graminis TH544 |
101486
|
2830128
|
2403320 |
Phyllachora leeae TH549 |
|
|
2403322 |
Phyllachora maydis BPI893231 |
|
|
2403349 |
Phyllachora picramniae MM-05 |
|
|
2403351 |
Phyllachora sp.1 MM-130 |
|
|
2403335 |
Phyllachora sp.2 MM-128 |
|
|
2403328 |
Phyllachora sp.2 MM-129 |
|
|
2403262 |
Phyllachora sp.3 MM-134 |
|
|
2403321 |
Phyllachora sp.3 MM-135 |
|
|
2403284 |
Phyllachora sp.3 MM-78 |
|
|
2403297 |
Phyllachora sp.3 MM-98 |
|
|
2403323 |
Phyllachora sp.3 SO-07 |
|
|
2403337 |
Phyllachora sp.4 RMB1061 |
|
|
2403303 |
Polystigma amygdalinum |
|
|
2403246 |
Polystigma pusillum MM-113 |
|
|
2403346 |
Polystigma pusillum MM-147 |
|
|
2403273 |
Polystigma pusillum MM-19 |
|
|
2403251 |
Polystigma sp. MM-163 |
|
|
2403292 |
Pseudohalonectria lignicola |
42149
|
3200490
|
2403316 |
Roumegueriella rufula |
29868
|
3201508
|
2403286 |
Serenomyces phoenicis PLM314 |
|
|
2403267 |
Serenomyces phoenicis PLM315 |
|
|
2403302 |
Sordaria fimicola |
27338
|
3059234
|
2403301 |
Sordaria macrospora |
5147
|
3134372
|
2403317 |
Sphaerodothis acrocomiae |
54039
|
1454208
|
2403307 |
Sphaerostilbella berkeleyana |
29871
|
3235937
|
2403339 |
Telimena aequatoriensis SO-05 |
|
|
2403326 |
Telimena bicincta MM-108 |
|
|
2403311 |
Telimena bicincta MM-133 |
|
|
2403249 |
Telimena canafistulae MM-13 |
|
|
2403338 |
Telimena engleri MM-159 |
|
|
2403350 |
Telimena engleri MM-153 |
|
|
2403319 |
Telimena engleri SO-09 |
|
|
2403260 |
Telimena engleri TH551 |
|
|
2403287 |
Telimena leeae TH549 |
|
|
2403279 |
Telimena picramniae MM-05 |
|
|
2403324 |
Telimena sp.2 MM-143 |
|
|
2403347 |
Telimena sp.2 MM-144 |
|
|
2403252 |
Telimena sp.3 MM-92 |
|
|
2403241 |
Telimena sp.4 MM-88 |
|
|
2403336 |
Telimena sp.5 MM-47 |
|
|
2403330 |
Telimena sp.6 SO-14 |
|
|
2403342 |
Telimena sp.6 SO-21 |
|
|
2403345 |
Telimena sp.6 SO-22 |
|
|
2403327 |
Telimena ulei SO-12 |
|
|
2403331 |
Telimena ulei TH574 |
|
|
2403282 |
Telimena zanthoxylicola TH550 |
|
|
2403274 |
Togninia vibratilis |
392537
|
|
2403289 |
Tolypocladium capitatum |
|
|
2403245 |
Tolypocladium japonicum |
|
|
2403255 |
Valsa ambiens |
148335
|
1454999
|
2403285 |
Verticillium dahliae |
27337
|
3100409
|
2403240 |
Xylaria acuta |
114808
|
3087838
|