@ARTICLE{TreeBASE2Ref15226,
author = {Elsie Magrietha de Meyer and Z. W. d. Beer and Richard C. Summerbell and Ahmad Mohammad Moharram and G. S. d. Hoog and Hester F. Vismer and Michael J Wingfield},
title = {Taxonomy and phylogeny of new wood- and soil-inhabiting Sporothrix species in the Ophiostoma stenoceras - Sporothrix schenckii complex},
year = {2008},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {Mycologia},
volume = {},
number = {},
pages = {},
abstract = {Sporothrix, one of the anamorph genera of Ophiostoma, includes the important human pathogen S. schenckii and various fungi associated with insects and sapstain of wood. A survey of fungi from wooden utility poles in South Africa yielded two distinct groups of Sporothrix isolates from different geographical areas. DNA sequence and morphological data derived in this study showed that isolates in these groups represent two novel species in the S. schenckii O. stenoceras species complex. A new species isolated from pine poles and rosebush wood and phylogenetically closely related to S. pallida, is described here as Sporothrix stylites. Phylogenetic analysis also confirmed the synonymy of S. albicans and S. nivea with S. pallida. Sporothrix stylites and S. pallida are also closely related to the isolates from soil, previously treated as environmental isolates of S. schenckii. Soil isolates are clearly distinct from human isolates of S. schenckii. We describe the former here as Sporothrix humicola. The isolates from eucalypt poles group peripheral to most other species in the S. schenckii - O. stenoceras complex, and are newly described as Sporothrix lignivora. Phylogenetic analysis of sequences of isolates from soil and wood together with those of clinical isolates showed that the human-pathogenic strains form an aggregate of several cryptic species.}
}
Taxa for tree 54953 of Study 2018

Citation title:
"Taxonomy and phylogeny of new wood- and soil-inhabiting Sporothrix species in the Ophiostoma stenoceras - Sporothrix schenckii complex".

This study was previously identified under the legacy study ID S2010
(Status: Published).
Taxa
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| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 838888 |
Caryospora bigenetica |
86281
|
5958198
|
| 838983 |
Choleoeimeria sp. |
169158
|
10196354
|
| 838899 |
Coccidium ex. Cricetus cricetus K4 |
|
4120207
|
| 838922 |
Cyclospora cayetanensis |
88456
|
5444625
|
| 838986 |
Cyclospora cercopitheci |
88457
|
5754821
|
| 838994 |
Cyclospora colobi |
88458
|
5754822
|
| 838928 |
Cyclospora papionis |
88459
|
5632147
|
| 839027 |
Cystoisispora ohioensis |
|
|
| 838935 |
Cystoisospora belli |
|
|
| 838930 |
Cystoisospora felis |
482539
|
5525935
|
| 838963 |
Cystoisospora orlovi |
|
|
| 838874 |
Cystoisospora suis |
|
|
| 838934 |
Cystoisospora timoni |
242061
|
5974701
|
| 838884 |
Eimeria acervulina |
5801
|
5454741
|
| 838916 |
Eimeria adenoeides |
|
6188440
|
| 838955 |
Eimeria ahsata |
155206
|
5964643
|
| 838972 |
Eimeria alabamensis |
99176
|
5959359
|
| 838887 |
Eimeria albigulae |
144186
|
5963328
|
| 838908 |
Eimeria antrozoi |
144187
|
5636386
|
| 838989 |
Eimeria arizonensis |
144188
|
5963329
|
| 838976 |
Eimeria arnyi |
280247
|
5993889
|
| 838995 |
Eimeria attwateri |
|
|
| 838940 |
Eimeria auburnensis |
310757
|
5994780
|
| 838974 |
Eimeria auritusi |
373907
|
5567279
|
| 838919 |
Eimeria banffensis |
|
|
| 838907 |
Eimeria bovis |
5803
|
5451981
|
| 838984 |
Eimeria brunetti |
51314
|
5711786
|
| 838883 |
Eimeria burdai |
|
5716878
|
| 838896 |
Eimeria cahirinensis NFS |
|
6136837
|
| 838943 |
Eimeria cahirinensis SFS |
|
6136837
|
| 838926 |
Eimeria cahirinensis WR |
|
6136837
|
| 838977 |
Eimeria callospermophili |
|
6130192
|
| 838961 |
Eimeria catronensis |
172735
|
5468711
|
| 838966 |
Eimeria caviae |
|
6180057
|
| 838909 |
Eimeria cf. mivati |
578108
|
|
| 838993 |
Eimeria chaetodipi |
172279
|
5966529
|
| 838969 |
Eimeria chinchillae |
|
|
| 838901 |
Eimeria chobotari |
172280
|
5966530
|
| 838985 |
Eimeria coecicola |
471281
|
5660140
|
| 838921 |
Eimeria crandallis |
42768
|
5953849
|
| 838979 |
Eimeria cylindrica |
310762
|
5981867
|
| 838902 |
Eimeria dipodomysis |
172281
|
5966531
|
| 838895 |
Eimeria ellipsoidalis |
310758
|
5718630
|
| 838939 |
Eimeria exigua |
484791
|
5628157
|
| 838971 |
Eimeria falciformis |
84963
|
5454561
|
| 838946 |
Eimeria faurei |
156219
|
5964715
|
| 838944 |
Eimeria flavescens |
471277
|
5517303
|
| 838953 |
Eimeria furonis |
|
|
| 838991 |
Eimeria gruis |
300409
|
5980863
|
| 838958 |
Eimeria intestinalis |
471278
|
6078389
|
| 838900 |
Eimeria irresidua |
484792
|
7028885
|
| 838980 |
Eimeria langebarteli |
162631
|
5965363
|
| 838957 |
Eimeria leucopi |
172282
|
5966532
|
| 838880 |
Eimeria magna |
471282
|
5529479
|
| 838992 |
Eimeria maxima |
5804
|
5447757
|
| 838903 |
Eimeria media |
471279
|
5666259
|
| 838937 |
Eimeria meleagrimitis |
75738
|
5957101
|
| 838905 |
Eimeria mitis |
44415
|
5953954
|
| 838920 |
Eimeria mivati |
54117
|
5954914
|
| 838933 |
Eimeria myoxi |
|
989472
|
| 838891 |
Eimeria nafuko |
|
|
| 838931 |
Eimeria necatrix |
51315
|
5507687
|
| 838970 |
Eimeria nieschulzi |
44416
|
5953955
|
| 838964 |
Eimeria onychomysis |
144189
|
5963330
|
| 838925 |
Eimeria ovinoidalis |
42767
|
5991190
|
| 838885 |
Eimeria papillata |
162632
|
5753637
|
| 838892 |
Eimeria perforans |
471283
|
|
| 838923 |
Eimeria peromysci |
172283
|
5966533
|
| 838889 |
Eimeria phalacrocoraxae |
373908
|
10303990
|
| 838915 |
Eimeria pilarensis |
172736
|
5966573
|
| 838945 |
Eimeria piriformis |
471280
|
|
| 838990 |
Eimeria polita |
130496
|
5962413
|
| 838950 |
Eimeria porci |
130497
|
5962414
|
| 838882 |
Eimeria praecox |
51316
|
5954613
|
| 838962 |
Eimeria ranae |
556924
|
6852587
|
| 838913 |
Eimeria reedi |
162633
|
5965364
|
| 838873 |
Eimeria reichenowi |
300410
|
5462543
|
| 838965 |
Eimeria rioarribaensis |
144190
|
5796711
|
| 838947 |
Eimeria scabra |
130498
|
5962415
|
| 838941 |
Eimeria scholtysecki |
172284
|
5992367
|
| 838948 |
Eimeria separata |
162634
|
5705848
|
| 838881 |
Eimeria sevilletensis |
162635
|
5965365
|
| 838906 |
Eimeria sp. ex. Acomys sp. K2 |
|
|
| 838949 |
Eimeria sp. ex. Apodemus agrarius 21439 |
|
|
| 838938 |
Eimeria sp. ex. Apodemus agrarius 21455 |
|
|
| 838910 |
Eimeria sp. ex. Apodemus agrarius 21615 |
|
|
| 838918 |
Eimeria sp. ex. Apodemus agrarius 21617 |
|
|
| 838914 |
Eimeria sp. ex. Apodemus agrarius 21655 |
|
|
| 838973 |
Eimeria sp. ex. Apodemus agrarius 21668 |
|
|
| 839019 |
Eimeria sp. ex. Apodemus flavicollis 1 |
|
|
| 839011 |
Eimeria sp. ex. Apodemus flavicollis 12 |
|
|
| 839020 |
Eimeria sp. ex. Apodemus flavicollis 4 |
|
|
| 838904 |
Eimeria sp. ex. Apodemus sylvaticus 0850 |
|
|
| 838875 |
Eimeria sp. ex. Apodemus sylvaticus 0853 |
|
|
| 838967 |
Eimeria sp. ex. Cricetus cricetus K7 |
|
|
| 838890 |
Eimeria sp. ex. Dendrocopos leucotos DAM2009 |
|
|
| 838929 |
Eimeria sp. ex. Gerbillus dasyurus |
|
|
| 838978 |
Eimeria sp. ex. Lissemys punctata TKC 1 2005 |
|
|
| 838886 |
Eimeria sp. ex. Lissemys punctata TKC 2 2005 |
|
|
| 838981 |
Eimeria sp. ex. Mastomys natalensis |
|
|
| 839010 |
Eimeria sp. ex. Phataginus tricuspis 1 |
|
|
| 839018 |
Eimeria sp. ex. Phataginus tricuspis 2 |
|
|
| 838917 |
Eimeria sp. ex. Sciurus carolinensis ESP181 |
|
|
| 839013 |
Eimeria sp. ex. Sorex araneus 136 |
|
|
| 838894 |
Eimeria stiedai |
471275
|
5502450
|
| 838936 |
Eimeria subspherica |
310759
|
5994781
|
| 838876 |
Eimeria synaptomysis |
|
|
| 838952 |
Eimeria telekii |
157073
|
5660425
|
| 838982 |
Eimeria tenella |
5802
|
5434519
|
| 838951 |
Eimeria trichosuri |
637837
|
5632409
|
| 838878 |
Eimeria tropidura |
172737
|
5966574
|
| 838932 |
Eimeria vejdovskyi |
471284
|
5753399
|
| 838893 |
Eimeria vilasi |
|
5654379
|
| 838956 |
Eimeria weybridgensis |
157168
|
5964824
|
| 838912 |
Eimeria wyomingensis |
310760
|
5994782
|
| 838954 |
Eimeria zuernii |
310761
|
5994783
|
| 838960 |
Goussia janae |
169156
|
5966165
|
| 838924 |
Goussia metchnikovi |
586547
|
5714918
|
| 838975 |
Goussia neglecta |
586548
|
6264340
|
| 838877 |
Goussia noelleri |
586549
|
|
| 838942 |
Goussia sp. ex. Bufo bufo |
|
|
| 838968 |
Isospora gryphoni |
84965
|
5808148
|
| 839016 |
Isospora hypoleucae |
632697
|
|
| 839026 |
Isospora rivolta |
|
6322989
|
| 838927 |
Isospora robini |
84966
|
5808149
|
| 839014 |
Isospora sp. ex. Apodemus flavicollis B13 |
|
|
| 839015 |
Isospora sp. ex. Sylvia atricapilla iSAT1 |
|
|
| 839021 |
Isospora sp. ex. Sylvia atricapilla iSAT2 |
|
|
| 839022 |
Isospora sp. ex. Sylvia atricapilla iSAT3 |
|
|
| 839012 |
Isospora sp. ex. Sylvia atricapilla iSAT4 |
|
|
| 839017 |
Isospora sp. ex. Sylvia atricapilla iSAT5 |
|
|
| 838898 |
Isospora sp. ex. Talpa europaea 106 |
|
|
| 838959 |
Isospora sp. ex. Talpa europaea 151 |
|
|
| 838897 |
Isospora sp. ex. Talpa europaea 158 |
|
|
| 839023 |
Isospora sp. ex. Talpa europaea 218 |
|
|
| 838988 |
Toxoplasma gondii |
398031
|
5433416
|
| 839028 |
intranuclear coccidium ex. Indotestudo forsteni |
|
|