@ARTICLE{TreeBASE2Ref24058,
author = {Hongying Jian and Kaixue Tang and Hang Sun},
title = {Phylogeography of Rosa soulieana (Rosaceae) in the Hengduan Mountains: Refugia and ?Melting? Pots in the Quaternary Climate Oscillations},
year = {2014},
keywords = {Phylogeography ? Rosa soulieana ? cpDNA ? Genetic structure ? Quaternary climate oscillation ? Refugia},
doi = {},
url = {http://},
pmid = {},
journal = {Plant Systematics and Evolution},
volume = {},
number = {},
pages = {},
abstract = {The Hengduan Mountains is the core of the Sino-Himalayan Floristic Region. Different views have been postulated from phylogeographic studies in understanding the historical biological events shaping present-day distributions and species diversities in this area. We analyzed the phylogeography of Rosa soulieana, a widely distributed rose species in dry and semi-dry valleys of the Hengduan Mountains of southwestern China using two cpDNA intergenic spacers. 9 cpDNA haplotypes were confirmed in 650 individuals from 39 populations, with the most dominant one existing in 36 populations. The relationship among the cpDNA haplotypes did not reflect the morphology-based intra-specific taxonomy of different varieties. There was very low cpDNA genetic diversity and relatively high population differentiation combined with lack of phylogeographic structure. The populations from Northwestern Yunnan, Southeastern Tibet and upper Yalongjiang River embraced most of the species genetic diversity, but with contribution of different historical effects. Northwestern Yunnan and upper Yalongjiang River appear to be the species refugia and centers of adaptive diversification, while Southeastern Tibet rather represents the species ?melting pot? in the Quaternary climate oscillations. }
}
Taxa for tree 106187 of Study 16911

Citation title:
"Phylogeography of Rosa soulieana (Rosaceae) in the Hengduan Mountains: Refugia and ?Melting? Pots in the Quaternary Climate Oscillations".

Study name:
"Phylogeography of Rosa soulieana (Rosaceae) in the Hengduan Mountains: Refugia and ?Melting? Pots in the Quaternary Climate Oscillations".

This study is part of submission 16911
(Status: Published).
Taxa
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| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 2853767 |
Dorystaechas hastata |
268878
|
5977810
|
| 2853699 |
Lepechinia caulescens |
|
8808827
|
| 2853860 |
Melissa officinalis |
39338
|
2655187
|
| 2853768 |
Perovskia atriplicifolia |
268885
|
1672851
|
| 2853878 |
Perovskia scrophulariifolia |
392637
|
8759534
|
| 2853898 |
Salvia acerifolia |
|
|
| 2853756 |
Salvia adenophora |
|
|
| 2853797 |
Salvia aegyptiaca |
392645
|
5854093
|
| 2853752 |
Salvia aequidistans |
|
3434995
|
| 2853896 |
Salvia agnes |
|
|
| 2853829 |
Salvia alamosana |
|
8866940
|
| 2853827 |
Salvia alba |
|
|
| 2853781 |
Salvia albocaerulea |
|
|
| 2853912 |
Salvia alborosea |
|
|
| 2853924 |
Salvia amarissima |
268887
|
5854099
|
| 2853865 |
Salvia amethystina |
|
|
| 2853693 |
Salvia amplifrons |
|
3435011
|
| 2853666 |
Salvia angulata |
|
3435081
|
| 2853707 |
Salvia angustiarum |
|
|
| 2853910 |
Salvia apiana |
392646
|
2655290
|
| 2853859 |
Salvia arborescens |
|
|
| 2853840 |
Salvia arbuscula |
|
8584178
|
| 2853676 |
Salvia areolata |
|
|
| 2853867 |
Salvia articulata |
|
|
| 2853875 |
Salvia aspera |
|
8775067
|
| 2853920 |
Salvia atrocyanea |
392648
|
9411101
|
| 2853798 |
Salvia aucheri |
392709
|
10316081
|
| 2853749 |
Salvia austriaca |
392649
|
5854101
|
| 2853685 |
Salvia axillaris |
392650
|
5854103
|
| 2853748 |
Salvia azurea |
392652
|
2655292
|
| 2853844 |
Salvia ballotiflora |
268890
|
2655293
|
| 2853835 |
Salvia betulifolia |
|
|
| 2853805 |
Salvia blepharophylla |
|
8839691
|
| 2853836 |
Salvia bogotensis |
|
|
| 2853856 |
Salvia breviflora |
|
|
| 2853850 |
Salvia brevipes |
|
|
| 2853841 |
Salvia buchananii |
|
|
| 2853843 |
Salvia bullulata |
|
|
| 2853885 |
Salvia bupleuroides |
|
|
| 2853743 |
Salvia cabulica |
392654
|
8515288
|
| 2853773 |
Salvia cacaliifolia |
392655
|
10316064
|
| 2853869 |
Salvia californica |
268894
|
5977816
|
| 2853821 |
Salvia calolophos |
|
10691161
|
| 2853911 |
Salvia candicans |
392656
|
8630867
|
| 2853845 |
Salvia carnea |
|
8775363
|
| 2853808 |
Salvia cedrosensis |
268897
|
5977817
|
| 2853880 |
Salvia cerradicola |
|
|
| 2853814 |
Salvia chamaedryoides |
268898
|
1794623
|
| 2853894 |
Salvia chapalensis |
|
|
| 2853847 |
Salvia chiapensis |
|
|
| 2853902 |
Salvia chionophylla |
|
|
| 2853709 |
Salvia cinnabarina |
|
8775431
|
| 2853832 |
Salvia clevelandii |
268900
|
2669168
|
| 2853796 |
Salvia clinopodioides |
|
8426468
|
| 2853770 |
Salvia coahuilensis |
|
|
| 2853874 |
Salvia coccinea |
260612
|
2655279
|
| 2853864 |
Salvia compsostachys |
|
|
| 2853710 |
Salvia concolor |
|
9094515
|
| 2853849 |
Salvia confertiflora |
|
1794673
|
| 2853780 |
Salvia confertispicata |
|
|
| 2853692 |
Salvia congestiflora |
|
|
| 2853679 |
Salvia connivens |
|
|
| 2853727 |
Salvia corrugata |
268901
|
5977818
|
| 2853918 |
Salvia cryptodonta |
|
|
| 2853866 |
Salvia cuatrecasana |
|
|
| 2853783 |
Salvia curviflora |
|
|
| 2853672 |
Salvia cuspidata gilliesii |
|
|
| 2853788 |
Salvia cuspidata rosea |
|
|
| 2853723 |
Salvia cyanicalyx |
|
|
| 2853697 |
Salvia decumbens |
|
|
| 2853839 |
Salvia densiflora |
|
|
| 2853816 |
Salvia diegoae |
|
|
| 2853737 |
Salvia discolor |
|
5922171
|
| 2853848 |
Salvia disjuncta |
|
|
| 2853711 |
Salvia divinorum |
28513
|
5416641
|
| 2853665 |
Salvia dombeyi |
|
5874550
|
| 2853863 |
Salvia dorisiana |
|
8882673
|
| 2853682 |
Salvia durifolia |
|
|
| 2853813 |
Salvia elegans |
|
4947705
|
| 2853742 |
Salvia erythrostoma |
|
8702725
|
| 2853901 |
Salvia exserta |
|
|
| 2853684 |
Salvia farinacea |
268905
|
2655304
|
| 2853799 |
Salvia filifolia |
|
|
| 2853795 |
Salvia filipes |
|
|
| 2853871 |
Salvia flaccidifolia |
|
8837644
|
| 2853701 |
Salvia flocculosa |
|
|
| 2853919 |
Salvia florida |
|
|
| 2853879 |
Salvia formosa |
|
|
| 2853926 |
Salvia forreri |
|
|
| 2853758 |
Salvia fruticulosa |
|
8775848
|
| 2853789 |
Salvia fulgens |
392661
|
1673036
|
| 2853922 |
Salvia gachantivana |
|
|
| 2853893 |
Salvia galloana |
|
|
| 2853917 |
Salvia garipensis |
392662
|
8798328
|
| 2853696 |
Salvia gesneriiflora |
|
|
| 2853791 |
Salvia glechomifolia |
|
|
| 2853876 |
Salvia gracilipes |
|
|
| 2853664 |
Salvia graciliramulosa |
392663
|
9185972
|
| 2853786 |
Salvia gravida |
|
8834409
|
| 2853830 |
Salvia greatae |
268907
|
2655306
|
| 2853793 |
Salvia greggii |
268908
|
2655282
|
| 2853714 |
Salvia grewiifolia |
|
9411237
|
| 2853846 |
Salvia guadalajarensis |
|
|
| 2853800 |
Salvia guaranitica |
204224
|
3434936
|
| 2853833 |
Salvia haenkei |
392664
|
8775963
|
| 2853734 |
Salvia heerii |
|
|
| 2853716 |
Salvia helianthemifolia |
|
|
| 2853760 |
Salvia herbacea |
|
|
| 2853747 |
Salvia heterofolia |
|
|
| 2853739 |
Salvia hidalgensis |
|
|
| 2853667 |
Salvia hilarii |
|
|
| 2853915 |
Salvia hintonii |
|
|
| 2853897 |
Salvia hirtella |
392665
|
8842942
|
| 2853705 |
Salvia hispanica |
49212
|
2655308
|
| 2853733 |
Salvia holwayi |
|
|
| 2853761 |
Salvia infuscata |
|
|
| 2853750 |
Salvia involucrata |
268913
|
1673051
|
| 2853811 |
Salvia iodantha |
|
8837564
|
| 2853751 |
Salvia ionocalyx |
|
|
| 2853730 |
Salvia jaimehintoniana |
|
|
| 2853694 |
Salvia jorgehintoniana |
|
|
| 2853906 |
Salvia karwinskii |
|
|
| 2853754 |
Salvia keerlii |
|
|
| 2853736 |
Salvia lachnostachys |
|
|
| 2853802 |
Salvia laevis |
|
|
| 2853818 |
Salvia langlassei |
|
|
| 2853854 |
Salvia languidula |
|
|
| 2853842 |
Salvia lasiantha |
392668
|
8809006
|
| 2853868 |
Salvia lasiocephala |
|
|
| 2853923 |
Salvia lavanduloides |
392669
|
1794679
|
| 2853817 |
Salvia leptostachys |
|
|
| 2853721 |
Salvia leucantha |
|
1673044
|
| 2853765 |
Salvia leucocephala |
|
|
| 2853810 |
Salvia leucochlamys |
|
|
| 2853787 |
Salvia lineata |
|
|
| 2853670 |
Salvia littae |
|
|
| 2853857 |
Salvia lobbii |
|
|
| 2853890 |
Salvia longispicata |
|
8776397
|
| 2853778 |
Salvia longistyla |
|
|
| 2853837 |
Salvia lophanthoides |
|
|
| 2853785 |
Salvia lycioides |
268914
|
2655313
|
| 2853779 |
Salvia macrophylla |
|
8789893
|
| 2853731 |
Salvia madrensis |
|
8426997
|
| 2853769 |
Salvia melaleuca |
|
|
| 2853718 |
Salvia melissiflora |
|
|
| 2853688 |
Salvia melissodora |
|
|
| 2853914 |
Salvia mellifera |
392671
|
2655314
|
| 2853771 |
Salvia mexicana |
|
5854151
|
| 2853753 |
Salvia microphylla |
268916
|
2669170
|
| 2853806 |
Salvia minarum |
|
|
| 2853686 |
Salvia misella |
268917
|
2655338
|
| 2853851 |
Salvia mocinoi |
392672
|
5875285
|
| 2853671 |
Salvia muelleri |
|
|
| 2853888 |
Salvia munzii |
392673
|
2655316
|
| 2853823 |
Salvia muscarioides |
|
|
| 2853870 |
Salvia myriantha |
|
|
| 2853853 |
Salvia nana |
|
|
| 2853803 |
Salvia nepetioides |
|
|
| 2853674 |
Salvia nervata |
|
|
| 2853728 |
Salvia nervosa |
|
|
| 2853713 |
Salvia nitida |
|
|
| 2853889 |
Salvia oaxacana |
|
8630991
|
| 2853812 |
Salvia occidentalis |
|
459545
|
| 2853858 |
Salvia officinalis |
38868
|
3874997
|
| 2853908 |
Salvia oppositiflora |
|
5854159
|
| 2853772 |
Salvia orbignaei |
392674
|
8776958
|
| 2853729 |
Salvia ovalifolia |
392675
|
8776985
|
| 2853690 |
Salvia oxyphora |
392676
|
3435071
|
| 2853792 |
Salvia palealis |
|
|
| 2853677 |
Salvia pallida |
|
8306146
|
| 2853899 |
Salvia palmeri |
|
|
| 2853907 |
Salvia pansamalensis |
|
|
| 2853916 |
Salvia parryi |
|
|
| 2853807 |
Salvia paryskii |
|
|
| 2853819 |
Salvia patens |
392677
|
1673040
|
| 2853881 |
Salvia pauciserrata |
|
|
| 2853725 |
Salvia peninsularis |
|
|
| 2853757 |
Salvia pennellii |
|
|
| 2853877 |
Salvia perlonga |
|
|
| 2853913 |
Salvia personata |
392678
|
8777213
|
| 2853715 |
Salvia pichinchensis |
|
|
| 2853712 |
Salvia pinguifolia |
|
|
| 2853909 |
Salvia plurispicata |
|
|
| 2853724 |
Salvia podadena |
|
|
| 2853855 |
Salvia polystachya |
268922
|
1794627
|
| 2853872 |
Salvia praestans |
|
|
| 2853884 |
Salvia procurrens |
392680
|
3435036
|
| 2853891 |
Salvia protracta |
|
|
| 2853862 |
Salvia prunelloides |
392681
|
8812963
|
| 2853838 |
Salvia pubescens |
392682
|
8777349
|
| 2853782 |
Salvia pulchella |
|
|
| 2853704 |
Salvia purpurea |
|
8809125
|
| 2853759 |
Salvia purpusii |
|
|
| 2853794 |
Salvia pusilla |
|
|
| 2853719 |
Salvia ramosa |
|
|
| 2853883 |
Salvia raymondii |
|
|
| 2853776 |
Salvia recurva |
|
|
| 2853882 |
Salvia reflexa |
|
459511
|
| 2853675 |
Salvia regla |
392683
|
2655323
|
| 2853689 |
Salvia reptans |
|
|
| 2853804 |
Salvia retinervia |
|
1794457
|
| 2853905 |
Salvia rhombifolia |
|
|
| 2853732 |
Salvia rhyacophila |
|
|
| 2853746 |
Salvia richardsonii |
|
|
| 2853702 |
Salvia roborowskii |
392684
|
5924559
|
| 2853755 |
Salvia rosei |
|
|
| 2853801 |
Salvia rubescens |
|
|
| 2853873 |
Salvia rubiginosa |
|
|
| 2853662 |
Salvia rufula |
|
|
| 2853777 |
Salvia rupicola |
|
|
| 2853687 |
Salvia rusbyi |
392686
|
3434974
|
| 2853766 |
Salvia rypara platystoma |
|
|
| 2853735 |
Salvia rypara rypara |
|
|
| 2853828 |
Salvia rzedowskii |
|
|
| 2853669 |
Salvia sagittata |
392688
|
5854174
|
| 2853809 |
Salvia sanctaeluciae |
|
|
| 2853762 |
Salvia sapinea |
|
|
| 2853775 |
Salvia sarmentosa |
|
|
| 2853822 |
Salvia scabrida |
|
|
| 2853726 |
Salvia scutellarioides |
392690
|
8777759
|
| 2853925 |
Salvia selleana |
|
|
| 2853708 |
Salvia semiatrata |
392691
|
8427807
|
| 2853774 |
Salvia setulosa |
|
|
| 2853738 |
Salvia sharpii |
|
|
| 2853861 |
Salvia simulans |
|
|
| 2853895 |
Salvia sinaloensis |
|
|
| 2853831 |
Salvia sophrona |
392694
|
3434949
|
| 2853764 |
Salvia sordida |
|
|
| 2853720 |
Salvia speciosa |
|
|
| 2853886 |
Salvia sphacelioides |
|
|
| 2853695 |
Salvia splendens |
180675
|
2655330
|
| 2853745 |
Salvia sprucei |
|
|
| 2853904 |
Salvia squalens |
|
|
| 2853815 |
Salvia stachydifolia |
392695
|
8777981
|
| 2853698 |
Salvia stachyoides |
|
|
| 2853744 |
Salvia stolonifera |
|
|
| 2853824 |
Salvia striata |
|
|
| 2853903 |
Salvia styphelus |
|
8790257
|
| 2853820 |
Salvia subrotunda |
|
|
| 2853722 |
Salvia sucrensis |
|
|
| 2853706 |
Salvia tehuacana |
|
|
| 2853680 |
Salvia tepicensis |
|
|
| 2853741 |
Salvia textitlana |
|
|
| 2853790 |
Salvia thymoides |
392697
|
8631114
|
| 2853691 |
Salvia thyrsiflora |
|
8852133
|
| 2853663 |
Salvia tiliifolia |
268933
|
2655333
|
| 2853825 |
Salvia tolimensis |
|
|
| 2853717 |
Salvia tomentella |
|
|
| 2853703 |
Salvia tonaticensis |
|
|
| 2853681 |
Salvia tortuosa |
|
8778251
|
| 2853673 |
Salvia trichocalycina |
392698
|
10316078
|
| 2853887 |
Salvia trichostephana |
|
|
| 2853921 |
Salvia tricuspidata |
392699
|
8778255
|
| 2853740 |
Salvia tubifera |
|
8813041
|
| 2853683 |
Salvia tubiflora |
|
|
| 2853784 |
Salvia tuerckheimii |
|
|
| 2853892 |
Salvia uliginosa |
49219
|
1673035
|
| 2853668 |
Salvia univerticillata |
|
|
| 2853834 |
Salvia urica |
|
|
| 2853852 |
Salvia vazquezii |
|
|
| 2853678 |
Salvia venulosa |
|
8702946
|
| 2853763 |
Salvia verecunda |
|
|
| 2853700 |
Salvia vitifolia |
|
|
| 2853826 |
Salvia wagneriana |
|
|
| 2853900 |
Salvia xalapensis |
|
|