@ARTICLE{TreeBASE2Ref27648,
author = {Jan Hackel and Maria Sergeevna Vorontsova and Olinirina P Nanjarisoa and Russell C. Hall and Jacqueline Razanatsoa and Panagiota Malakasi and Guillaume Besnard},
title = {Grass diversification in Madagascar: in situ radiation of two large C3 shade clades and support for a Miocene to Pliocene origin of C4 grassy biomes},
year = {2018},
keywords = {Poaceae, Madagascar, Mascarenes, dispersal, diversification, C4 grasslands, ancestral range estimation, Boivinellinae, Hickeliinae},
doi = {10.1111/jbi.13147},
url = {http://},
pmid = {},
journal = {Journal of Biogeography},
volume = {},
number = {},
pages = {},
abstract = {Aim
Grasses (Poaceae) are found in all major habitats of Madagascar and have a particular importance in C4 grasslands, whose origins are controversial. We aimed to estimate the number, age and origins of endemic grass lineages in the Madagascar region, and to compare the diversification of C3 and C4 taxa.
Location
Madagascar and the surrounding Indian Ocean islands, integrated within a global dataset.
Methods
We estimated 11 time-calibrated molecular phylogenies including 73% of Madagascar's known grass flora (65% of endemics), using two calibration scenarios. Integrating the available sequences from worldwide grass species, a total of 1928 accessions were analysed. We tested range evolution models, estimated ancestral ranges, and compared the patterns of lineage accumulation between endemic C3 and C4 grasses.
Results
We recovered 69 lineages endemic to or with an estimated origin in the Madagascar region, 25 of them C3 and 44 C4. Range evolution analysis suggests widespread distance-scaling of dispersal and strongest historical links to Africa. Extant grass diversity largely accumulated since the Miocene, with parallel increases in C3 and C4 taxa. Two large C3 groups in the ?Forest shade clade? (Paniceae: Boivinellinae) and the bamboos (subtribe Hickeliinae) have an estimated origin in the Madagascar region. Divergences and crown ages of endemic C4 lineages largely coincide with the Miocene grassland expansion.
Main conclusions
Madagascar's extant grass flora is the result of multiple overseas dispersals, predominantly from Africa, and diversified from the Miocene onwards. C3 grasses are characterised by two large presumed in situ radiations of shade grasses in the Paniceae and bamboos. Endemic C4 lineages result from twice as many immigration events, resulting in smaller clades. Ages of C4 lineages are consistent with a Pliocene or Late Miocene origin of grasslands in Madagascar, but estimating the nature and expanse of such early grasslands will require further research.}
}
Taxa for tree 107177 of Study 21602

Citation title:
"Grass diversification in Madagascar: in situ radiation of two large C3 shade clades and support for a Miocene to Pliocene origin of C4 grassy biomes".

Study name:
"Grass diversification in Madagascar: in situ radiation of two large C3 shade clades and support for a Miocene to Pliocene origin of C4 grassy biomes".

This study is part of submission 21602
(Status: Published).
Taxa
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| ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
| 2908985 |
Anadelphia scyphofera MSV1652 |
|
|
| 2908925 |
Andropogon africanus MSV1658 |
|
|
| 2908977 |
Andropogon amethystinus MSV1606 |
|
|
| 2908979 |
Andropogon andringitrensis MSV1260 |
|
|
| 2908986 |
Andropogon bicornis GB232012 |
330579
|
2660774
|
| 2908932 |
Andropogon canaliculatus MSV1662 |
|
|
| 2908967 |
Andropogon chrysostachyus MSV1602 |
|
|
| 2909008 |
Andropogon eucomus MSV576 |
106882
|
5822672
|
| 2908926 |
Andropogon eucomus subsp. huillensis MSV618 |
|
|
| 2908937 |
Andropogon gayanus JMK213 |
|
|
| 2908936 |
Andropogon gerardii |
79824
|
2660770
|
| 2909016 |
Andropogon ibityensis MSV754 |
|
|
| 2908972 |
Andropogon itremoensis MSV753 |
|
|
| 2908974 |
Andropogon schirensis L16609 |
|
|
| 2908939 |
Andropterum stolzii JMK270 |
|
|
| 2908976 |
Apluda mutica |
91508
|
2670776
|
| 2909000 |
Arthraxon antsirabensis NOP217 |
|
|
| 2908913 |
Arthraxon lanceolatus |
435775
|
5823825
|
| 2908357 |
Arundinella berteroniana |
|
3485342
|
| 2909026 |
Arundinella deppeana |
435776
|
10749097
|
| 2908950 |
Arundinella hirta |
79825
|
5957546
|
| 2908988 |
Arundinella nepalensis MSV608 |
66002
|
5823990
|
| 2908949 |
Bothriochloa insculpta MSV1637 |
106883
|
2661496
|
| 2908968 |
Bothriochloa ischaemum |
29660
|
2661497
|
| 2908997 |
Bothriochloa pertusa MSV353 |
330554
|
2661490
|
| 2908920 |
Bothriochloa saccharoides |
435779
|
2661498
|
| 2909027 |
Bothriochloa sp. MSV1632 |
|
|
| 2908957 |
Capillipedium parviflorum |
79829
|
3485547
|
| 2909011 |
Chionachne gigantea |
|
8646789
|
| 2909001 |
Chionachne koenigii |
91509
|
5829730
|
| 2908924 |
Chrysopogon aciculatus GB092014 |
|
|
| 2909014 |
Chrysopogon fulvus |
79831
|
2661564
|
| 2908914 |
Chrysopogon gryllus |
79832
|
5957547
|
| 2908903 |
Chrysopogon humbertianus MSV1413 |
|
|
| 2908946 |
Chrysopogon latifolius |
|
5829940
|
| 2908940 |
Chrysopogon pallidus |
|
9210424
|
| 2908922 |
Chrysopogon plumulosus MSV802 |
|
|
| 2908905 |
Chrysopogon serrulatus MSV326 |
330583
|
5829947
|
| 2909012 |
Chrysopogon zizanioides |
167337
|
3485597
|
| 2908895 |
Cleistachne sorghoides |
29670
|
5830321
|
| 2908963 |
Coelorachis selloana |
91511
|
5958679
|
| 2908907 |
Coix lacrymajobi |
|
|
| 2908975 |
Cymbopogon caesius |
|
|
| 2909024 |
Cymbopogon caesius MSV599 |
|
|
| 2908919 |
Cymbopogon citratus GB252012 |
66014
|
2661595
|
| 2908993 |
Cymbopogon commutatus MSV779 |
79834
|
5957548
|
| 2908902 |
Cymbopogon flexuosus |
79835
|
2670620
|
| 2908956 |
Cymbopogon iwarancusa |
|
|
| 2908984 |
Cymbopogon nardus |
549175
|
2661597
|
| 2908894 |
Dichanthium annulatum MSV582 |
106888
|
2661653
|
| 2908921 |
Dichanthium aristatum MSV949 |
79844
|
2661654
|
| 2908955 |
Dichanthium foveolatum MSV878 |
|
|
| 2908954 |
Dichanthium sericeum |
330558
|
2661655
|
| 2908930 |
Dichanthium setosum |
|
5833506
|
| 2908987 |
Diectomis fastigiata JMK209 |
330559
|
2662085
|
| 2908346 |
Digitaria sanguinalis |
121769
|
2660868
|
| 2908947 |
Diheteropogon amplectens var. catangensis MSV1671 |
|
|
| 2908952 |
Diheteropogon hagerupii |
|
9428109
|
| 2908911 |
Dimeria manongarivensis MSV343 |
|
|
| 2908929 |
Elionurus citreus |
|
9509346
|
| 2908893 |
Elionurus muticus JMK145 |
91514
|
3485800
|
| 2908973 |
Elionurus royleanus MSV826 |
|
|
| 2908989 |
Elionurus tristis MSV589 |
|
|
| 2909032 |
Eulalia aurea |
167339
|
5864357
|
| 2909018 |
Eulalia contorta |
|
5835768
|
| 2908982 |
Eulalia villosa MSV621 |
200566
|
5835786
|
| 2909030 |
Exotheca abyssinica MSV1599 |
|
|
| 2908917 |
Garnotia fergusonii |
|
8799512
|
| 2909023 |
Germainia truncatiglumis |
|
9222280
|
| 2908978 |
Hemarthria natans MSV614 |
|
|
| 2909010 |
Hemarthria uncinata |
66028
|
5860409
|
| 2908953 |
Heteropholis sulcata |
|
8968862
|
| 2908900 |
Heteropogon contortus |
79849
|
2661713
|
| 2908992 |
Heteropogon contortus MSV327 |
79849
|
2661713
|
| 2909009 |
Heteropogon melanocarpus NOP139 |
|
|
| 2908909 |
Hyparrhenia anamesa MSV1640 |
106889
|
5960137
|
| 2908899 |
Hyparrhenia bracteata MSV1664 |
|
|
| 2908998 |
Hyparrhenia collina MSV1639 |
|
|
| 2908934 |
Hyparrhenia cymbaria MSV1628 |
|
|
| 2908991 |
Hyparrhenia hirta |
42079
|
2661725
|
| 2908970 |
Hyparrhenia newtonii MSV721 |
|
|
| 2908971 |
Hyparrhenia nyassae MSV1518 |
|
|
| 2908908 |
Hyparrhenia rufa MSV328 |
167342
|
2661726
|
| 2908935 |
Hyparrhenia schimperi MSV720 |
|
|
| 2908910 |
Hyperthelia dissoluta MSV910 |
330566
|
10276267
|
| 2908360 |
Ichnanthus pallens |
158109
|
2662094
|
| 2908969 |
Imperata cylindrica |
80369
|
2576458
|
| 2908912 |
Imperata cylindrica RCH64 |
80369
|
2576458
|
| 2908898 |
Ischaemum afrum |
91515
|
5864793
|
| 2908966 |
Ischaemum guianense GB242012 |
|
|
| 2908891 |
Ischaemum heterotrichum MSV643 |
|
|
| 2909020 |
Ischaemum koleostachys |
167338
|
5965918
|
| 2909007 |
Ischaemum koleostachys MSV1299 |
167338
|
5965918
|
| 2908995 |
Ischaemum rugosum MSV501 |
|
|
| 2908915 |
Ischaemum santapaui |
79851
|
5840525
|
| 2908962 |
Iseilema macratherum |
|
5840541
|
| 2908938 |
Lasiorrhachis hildebrandtii LRK2008 |
|
|
| 2908933 |
Lasiorrhachis hildebrandtii MSV739 |
|
|
| 2908906 |
Lasiorrhachis perrieri NOP140 |
|
|
| 2908944 |
Lasiorrhachis viguieri MSV1248 |
|
|
| 2908961 |
Microstegium nudum MSV1845 |
91517
|
5958680
|
| 2908994 |
Microstegium vimineum |
91518
|
2668166
|
| 2908990 |
Miscanthus floridulus |
154761
|
2661803
|
| 2908951 |
Monocymbium ceresiiforme MSV1679 |
|
|
| 2908981 |
Ophiuros exaltatus |
|
5846487
|
| 2908035 |
Panicum virgatum |
38727
|
2661084
|
| 2908897 |
Phacelurus digitatus |
91521
|
5848342
|
| 2909003 |
Pogonatherum paniceum |
167341
|
5850021
|
| 2908336 |
Reynaudia filiformis |
|
10760119
|
| 2909019 |
Rhytachne rottboellioides MSV592 |
|
|
| 2909017 |
Rottboellia cochinchinensis MSV948 |
300125
|
2669048
|
| 2909005 |
Saccharum officinarum |
4547
|
2661940
|
| 2909028 |
Schizachyrium brevifolium RGD199 |
330585
|
2661952
|
| 2908927 |
Schizachyrium cf. sanguineum MSV1045 |
|
|
| 2909015 |
Schizachyrium sanguineum RGD180 |
330573
|
2661956
|
| 2908945 |
Schizachyrium scoparium |
79855
|
2661957
|
| 2909031 |
Sehima nervosum |
|
2661967
|
| 2909006 |
Sorghastrum nutans |
79857
|
2661970
|
| 2908941 |
Sorghum amplum |
143042
|
5880802
|
| 2908931 |
Sorghum angustum |
91524
|
5880804
|
| 2908942 |
Sorghum arundinaceum |
91525
|
2788419
|
| 2909022 |
Sorghum arundinaceum MSV704 |
91525
|
2788419
|
| 2908377 |
Sorghum bicolor |
4558
|
4962526
|
| 2908965 |
Sorghum bulbosum |
91526
|
5880808
|
| 2908996 |
Sorghum ecarinatum |
143044
|
3487161
|
| 2909021 |
Sorghum exstans |
143045
|
5880811
|
| 2908892 |
Sorghum halepense |
4560
|
2661976
|
| 2908959 |
Sorghum interjectum |
143047
|
5880813
|
| 2908928 |
Sorghum intrans |
143048
|
5855864
|
| 2908904 |
Sorghum laxiflorum |
29698
|
5855866
|
| 2909025 |
Sorghum leiocladum |
91527
|
5855868
|
| 2908943 |
Sorghum macrospermum |
29699
|
5880817
|
| 2908918 |
Sorghum matarankense |
29705
|
5880819
|
| 2909002 |
Sorghum nitidum |
29701
|
3487158
|
| 2908980 |
Sorghum propinquum |
132711
|
2670601
|
| 2908948 |
Sorghum purpureosericeum |
29702
|
5855895
|
| 2908916 |
Sorghum stipoideum |
29703
|
5953050
|
| 2908890 |
Sorghum timorense |
91528
|
5880821
|
| 2908999 |
Sorghum versicolor |
29704
|
5855915
|
| 2909029 |
Spodiopogon sibiricus |
200562
|
5970036
|
| 2908901 |
Thaumastochloa monilifera |
|
9230812
|
| 2908960 |
Themeda avenacea |
|
5864709
|
| 2909004 |
Themeda quadrivalvis MSV350 |
167343
|
2662025
|
| 2908923 |
Themeda triandra |
106636
|
2576516
|
| 2909013 |
Themeda triandra MSV1634 |
106636
|
2576516
|
| 2908896 |
Trachypogon spicatus RGD192 |
106638
|
2676670
|
| 2908964 |
Tripsacum dactyloides GB032011 |
4563
|
2661351
|
| 2908958 |
Urelytrum agropyroides RGD184 |
|
|
| 2908983 |
Zea mays |
4577
|
466912
|