@ARTICLE{TreeBASE2Ref28050,
author = {Tu Anh Nguyen and Jamie Greig and Asif Khan and Cara Goh and Gregory Jedd},
title = {Evolutionary novelty through horizontal gene transfer and high-order protein assembly},
year = {2018},
keywords = {Horizontal gene transfer, gravitropism, evolutionary novelty},
doi = {},
url = {http://},
pmid = {},
journal = {PLoS Biology},
volume = {},
number = {},
pages = {},
abstract = {Horizontal gene transfer (HGT) can promote evolutionary adaptation by transforming a
species? relationship to the environment. Most well understood cases of HGT involve
the transfer of enzyme-encoding genes, where acquired and donor functions appear to
remain closely related. The degree to which HGT can lead to evolutionary novelties
remains unclear. Mucorales fungi sense gravity through the sedimentation of vacuolar
protein crystals. Here, we identify their major constituent protein, OCTIN. Phylogenetic analysis strongly supports acquisition of octin by HGT from bacteria to the common ancestor of the Mucorales. A bacterial OCTIN forms high-order oligomers in the periplasm and disulphide bonds underlie the stability of both crystals and bacterial oligomers, suggesting that they share elements of a conserved assembly mechanism. However, estimated sedimentation velocities of bacterial OCTIN oligomers preclude any speculated role in bacterial gravity sensing. Together, out data suggest that HGT into the Mucorales allowed a dramatic increase in assembly scale and acquisition of the gravity sensing function. We conclude that HGT can lead to evolutionary novelties that emerge depending on the cellular context of protein assembly.}
}
Taxa for Study 22167
Citation title:
"Evolutionary novelty through horizontal gene transfer and high-order protein assembly".
Study name:
"Evolutionary novelty through horizontal gene transfer and high-order protein assembly".
This study is part of submission 22167
(Status: Published).
Taxa
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
3168320 |
Achlya hypogyna |
|
|
3168207 |
Acidobacteriaceae bacterium KBS_96 |
|
|
3168284 |
Acidobacteriaceae bacterium URHE0068 |
|
|
3168263 |
Agreia sp. Leaf210 |
|
|
3168315 |
Agreia sp. Leaf244 |
|
|
3168276 |
Agreia sp. Leaf283 |
|
|
3168300 |
Agreia sp. Leaf335 |
|
|
3168225 |
Albugo candida |
65357
|
3037072
|
3168242 |
Algoriphagus sp. M8.2 |
|
|
3168305 |
Amycolatopsis australiensis |
546364
|
|
3168250 |
Amycolatopsis benzoatilytica |
346045
|
5984818
|
3168264 |
Amycolatopsis methanolica |
1814
|
2553932
|
3168278 |
Amycolatopsis nigrescens |
381445
|
10308773
|
3168230 |
Amycolatopsis orientalis |
31958
|
229773
|
3168285 |
Amycolatopsis sp. ATCC 39116 |
385957
|
|
3168244 |
Amycolatopsis sp. M39 |
37632
|
10140163
|
3168314 |
Amycolatopsis taiwanensis |
342230
|
5984607
|
3168227 |
Amycolatopsis thermoflava |
84480
|
2553939
|
3168216 |
Aphanomyces astaci |
112090
|
5960399
|
3168311 |
Asticcacaulis sp. AC466 |
|
|
3168287 |
Aureococcus anophagefferens |
44056
|
5447766
|
3168206 |
Bacteroidales bacterium 6E |
|
|
3168197 |
Bacteroides stercorirosoris |
|
|
3168281 |
Candidatus Solibacter usitatus |
332163
|
|
3168271 |
Catelliglobosispora koreensis |
|
|
3168251 |
Cellulomonas sp. KRMCY2 |
40001
|
10141128
|
3168231 |
Cellulosimicrobium aquatile |
|
|
3168239 |
Cellulosimicrobium cellulans |
1710
|
2554798
|
3168267 |
Cellulosimicrobium funkei |
264251
|
5977289
|
3168224 |
Cellulosimicrobium sp. I38E |
|
|
3168269 |
Cellulosimicrobium sp. MM |
|
|
3168213 |
Choanephora cucurbitarum |
101091
|
9731148
|
3168196 |
Deinococcus apachensis |
309886
|
5994764
|
3168226 |
Devosia sp. Root105 |
|
|
3168302 |
Devosia sp. Root413D1 |
|
|
3168286 |
Dyadobacter beijingensis |
365489
|
|
3168275 |
Dyella japonica |
231455
|
5973555
|
3168240 |
Dyella jiangningensis |
|
|
3168233 |
Emiliania huxleyi |
2903
|
2329411
|
3168235 |
Emticicia oligotrophica |
312279
|
5994827
|
3168310 |
Emticicia sp. MM |
|
|
3168199 |
Fimbriimonas ginsengisoli |
|
|
3168246 |
Flavihumibacter solisilvae |
|
|
3168298 |
Flavisolibacter ginsengisoli |
462367
|
|
3168202 |
Flavobacterium granuli |
280093
|
5978801
|
3168220 |
Glycomyces arizonensis |
256035
|
3520110
|
3168291 |
Granulicella mallensis |
|
|
3168217 |
Haliscomenobacter hydrossis |
2350
|
2556030
|
3168270 |
Hamadaea tsunoensis |
|
|
3168209 |
Hymenobacter sp. PAMC 26628 |
|
|
3168238 |
Janthinobacterium sp. HH01 |
|
|
3168245 |
Jiangella alba |
561176
|
|
3168248 |
Jiangella alkaliphila |
419479
|
|
3168294 |
Jiangella gansuensis |
281473
|
5993904
|
3168255 |
Jiangella muralis |
|
|
3168262 |
Kibdelosporangium sp. MJ126.NF4 |
|
|
3168229 |
Kribbella catacumbae |
460086
|
|
3168249 |
Kribbella flavida |
182640
|
2556361
|
3168253 |
Leifsonia sp. Root227 |
|
|
3168280 |
Limnochorda pilosa |
|
|
3168279 |
Luteibacter rhizovicinus |
242606
|
5974763
|
3168301 |
Luteibacter sp. UNCMF366Tsu5.1 |
|
|
3168243 |
Luteimonas sp. FCS.9 |
|
|
3168203 |
Lysobacter antibioticus |
84531
|
2556658
|
3168274 |
Lysobacter capsici |
435897
|
|
3168260 |
Lysobacter enzymogenes |
69
|
229822
|
3168293 |
Lysobacter gummosus |
262324
|
2556662
|
3168205 |
Lysobacter sp. Root604 |
72226
|
10152524
|
3168308 |
Lysobacter sp. Root667 |
72226
|
10152524
|
3168292 |
Lysobacter sp. Root690 |
72226
|
10152524
|
3168232 |
Lysobacter sp. Root916 |
72226
|
10152524
|
3168258 |
Lysobacter sp. Root983 |
72226
|
10152524
|
3168321 |
Mariniradius saccharolyticus |
|
|
3168200 |
Microbacterium arborescens |
33883
|
2556945
|
3168208 |
Microbacterium paludicola |
300019
|
5994547
|
3168299 |
Microbacterium sp. TS.1 |
51671
|
9733025
|
3168211 |
Micromonospora avicenniae |
|
|
3168282 |
Micromonospora cremea |
|
|
3168277 |
Micromonospora sp. CB01531 |
1876
|
10128806
|
3168273 |
Mucor circinelloides |
36080
|
3102064
|
3168268 |
Nitrospirillum amazonense |
|
|
3168289 |
Nocardioides sp. Iso805N |
35761
|
9732934
|
3168257 |
Oerskovia enterophila |
|
|
3168288 |
Oerskovia sp. Root22 |
|
|
3168309 |
Oerskovia sp. Root918 |
|
|
3168241 |
Oerskovia turbata |
1713
|
2557505
|
3168303 |
Paraglaciecola arctica |
|
|
3168247 |
Parasitella parasitica |
35722
|
2832621
|
3168297 |
Pedobacter borealis |
475254
|
|
3168266 |
Pelagibacterium halotolerans |
|
|
3168313 |
Pelomonas sp. Root1217 |
|
|
3168218 |
Pelomonas sp. Root1237 |
|
|
3168272 |
Petrimonas mucosa |
|
|
3168317 |
Phocaeicola abscessus |
|
|
3168236 |
Phycomyces blakesleeanus |
4837
|
2832683
|
3168198 |
Phytophthora sojae |
67593
|
3184330
|
3168254 |
Prevotella sp. 10H |
59823
|
10147807
|
3168222 |
Promicromonospora sukumoe |
88382
|
2557908
|
3168219 |
Pseudoxanthomonas mexicana |
128785
|
3520318
|
3168261 |
Pseudoxanthomonas sp. Root630 |
|
|
3168214 |
Pseudoxanthomonas sp. Root65 |
|
|
3168215 |
Rhizopus microsporus |
58291
|
2832470
|
3168210 |
Rhodanobacter sp. OK091 |
|
|
3168296 |
Rhodanobacter sp. Root480 |
|
|
3168234 |
Rhodanobacter sp. Root627 |
|
|
3168304 |
Rhodanobacter thiooxydans |
|
|
3168319 |
Rudaea cellulosilytica |
|
|
3168212 |
Saprolegnia diclina |
112098
|
5960402
|
3168316 |
Sphingomonas asaccharolytica |
40681
|
3866014
|
3168252 |
Sphingomonas koreensis |
93064
|
3866021
|
3168318 |
Sphingomonas mali |
40682
|
3866023
|
3168283 |
Sphingomonas pruni |
40683
|
3866028
|
3168204 |
Sphingomonas sp. ABOJV |
|
|
3168237 |
Sphingomonas sp. ERG5 |
28214
|
9733193
|
3028951 |
Stackebrandtia nassauensis |
283811
|
5979290
|
3168295 |
Stenotrophomonas acidaminiphila |
128780
|
2558752
|
3168259 |
Stenotrophomonas ginsengisoli |
|
|
3168307 |
Stenotrophomonas humi |
|
|
3168290 |
Stenotrophomonas maltophilia |
40324
|
2558754
|
3168201 |
Stenotrophomonas nitritireducens |
83617
|
2558755
|
3168221 |
Stenotrophomonas sp. Leaf70 |
69392
|
10151598
|
3168265 |
Stenotrophomonas terrae |
|
|
3168228 |
Streptomyces sp. AA4 |
1931
|
9733195
|
3168256 |
Streptomyces sp. NRRL F.3213 |
|
|
3168306 |
Terracidiphilus gabretensis |
|
|
3168223 |
Terriglobus saanensis |
|
|
3168312 |
Timonella senegalensis |
|
|