@ARTICLE{TreeBASE2Ref20620,
author = {Randall Gene Terry and Jim A. Bartel and Robert P. Adams},
title = {Phylogenetic relationships among the New World cypresses (Hesperocyparis; Cupressaceae): evidence from noncoding chloroplast DNA sequences},
year = {2012},
keywords = {New World cypresses (NWC); Hesperocyparis; western cypress; noncoding chloroplast DNA (cpDNA); phylogenetic relationships},
doi = {10.1007/s00606-012-0696-3},
url = {http://www.springerlink.com/content/x4u646227313/},
pmid = {},
journal = {Plant Systematics and Evolution},
volume = {298},
number = {},
pages = {1987--2000},
abstract = {Nearly 5.6 kb of noncoding chloroplast DNA sequence was combined with 9.2 kb of previously published sequence in addressing phylogenetic relationships among Callitropsis, Xanthocyparis, and the New World cypresses (Hesperocyparis; Cupressaceae). Maximum likelihood and Bayesian analyses of aligned nucleotide sequence and coded length mutations provide strong support for several relationships. These include a clade in which Xanthocyparis and Callitropsis are successively nested at the base of a monophyletic Hesperocyparis and identification of H. bakeri as sister to the remaining Hesperocyparis. Two principal clades are recovered within Hesperocyparis; 1) the Arizonica clade, which contains taxa sometimes recognized as varieties of H. lusitanica, H. guadalupensis, and H. arizonica, and 2) the Macrocarpa clade, which contains H. macrocarpa and H. goveniana and its allies. Our results are equivocal with respect to placement of H. macnabiana, a morphologically distinct species resolved as the sister group to either the Macrocarpa or Arizonica clade, depending on the data set analyzed. We discover many instances in which taxa recognized as varieties or closely related species are placed in disparate parts of the phylogeny. These include segregates of H. lusitanica, H. guadalupensis, and H. arizonica, all of which are included in clades with other species. Despite analyzing 14,799 bp of aligned sequence and 230 binary characters, we find poor support for several relationships, especially within the Arizonica clade. These results suggest recovery well-supported relationships among the closely related taxa of Hesperocyparis will require additional sources of evidence (e.g., morphological, biochemical characters). Implications for morphological evolution and taxonomic revision are discussed.}
}
Taxa for Study 12614
Citation title:
"Phylogenetic relationships among the New World cypresses (Hesperocyparis; Cupressaceae): evidence from noncoding chloroplast DNA sequences".
Study name:
"Phylogenetic relationships among the New World cypresses (Hesperocyparis; Cupressaceae): evidence from noncoding chloroplast DNA sequences".
This study is part of submission 12614
(Status: Published).
Taxa
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
4188717 |
Aplosporella prunicola CBS121167 |
462254
|
|
4188709 |
Botryosphaeria dothidea |
55169
|
1207247
|
4188707 |
Botryosphaeria kuwatsukai CBS135219 |
|
|
4188716 |
Coniosporium apollinis CBS100218 |
61459
|
3283594
|
4188713 |
Diplodia corticola CBS112549 |
548935
|
9730067
|
4188706 |
Diplodia sapinea CBS138184 |
|
3058347
|
4188715 |
Diplodia scrobiculata CBS139796 |
280322
|
4037089
|
4188703 |
Diplodia seriata CBS112555 |
420778
|
3086572
|
4188696 |
Diplodia seriata DS831 |
420778
|
3086572
|
4188704 |
Diplodia seriata F98 |
420778
|
3086572
|
4188724 |
Lasiodiplodia gonubiensis CBS115812 |
336252
|
5984346
|
4188720 |
Lasiodiplodia pseudotheobromae CBS116459 |
466954
|
|
4188711 |
Lasiodiplodia theobromae CBS 164 96 |
|
|
4188730 |
Macrophomina phaseolina MS6 |
35725
|
3181295
|
4188726 |
Melanops tulasnei CBS116805 |
371115
|
3061745
|
4188727 |
Neofusicoccum cordaticola CBS123634 |
643000
|
|
4188723 |
Neofusicoccum kwambonambiense CBS123639 |
643001
|
|
4188721 |
Neofusicoccum parvum UCRNP2 |
310453
|
9730069
|
4188710 |
Neofusicoccum ribis CBS115475 |
528155
|
9730072
|
4188722 |
Neofusicoccum umdonicola CBS123644 |
643002
|
|
4188708 |
Neoscytalidium dimidiatum UM880 |
108428
|
9730531
|
4188714 |
Phyllosticta abieticola CBS112067 |
|
|
4188719 |
Phyllosticta ampelicida ATCC200578 |
115983
|
3199141
|
4021159 |
Phyllosticta capitalensis CBS128856 |
121624
|
3076339
|
4021158 |
Phyllosticta capitalensis Gm33 |
121624
|
3076339
|
4021153 |
Phyllosticta capitalensis LGMF01 |
121624
|
3076339
|
4188729 |
Phyllosticta cavendishii BRIP55420 |
|
|
4021152 |
Phyllosticta citriasiana CBS120486 |
595635
|
|
4021150 |
Phyllosticta citriasiana CGMCC314344 |
595635
|
|
4021151 |
Phyllosticta citribraziliensis CBS100098 |
|
|
4021154 |
Phyllosticta citribraziliensis LGMF08 |
|
|
4021163 |
Phyllosticta citricarpa CBS127454 |
55181
|
3199151
|
4021156 |
Phyllosticta citricarpa CGMCC314348 |
55181
|
3199151
|
4021157 |
Phyllosticta citricarpa CPC27913 |
55181
|
3199151
|
4021162 |
Phyllosticta citricarpa Gc12 |
55181
|
3199151
|
4021160 |
Phyllosticta citricarpa LGMF06 |
55181
|
3199151
|
4021164 |
Phyllosticta citrichinaensis CBS130529 |
|
|
4188705 |
Phyllosticta maculata CBS132581 |
|
|
4188728 |
Phyllosticta musarum BRIP55434 |
|
3167311
|
4188712 |
Phyllosticta paracapitalensis CBS141353 |
|
|
4021161 |
Phyllosticta paracitricarpa CBS141357 |
|
|
4188718 |
Phyllosticta rubella CBS111635 |
|
|
4188725 |
Saccharata proteae CBS121410 |
131308
|
10178060
|