@ARTICLE{TreeBASE2Ref31343,
author = {David M Geiser},
title = {Phylogenomic analysis of a 55.1 kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani species complex},
year = {2020},
keywords = {},
doi = {},
url = {http://},
pmid = {},
journal = {Phytopathology},
volume = {},
number = {},
pages = {},
abstract = {Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user's needs and established successful practice. Previously (Geiser et al. 2013; Phytopathology 103:400-408. 2013), the Fusarium community nearly unanimously voiced support for a concept of Fusarium that represented a clade comprising all agriculturally and clinically important Fusarium species, including the Fusarium solani Species Complex (FSSC). Subsequently, this concept was challenged by one research group (Lombard et al. 2015 Studies in Mycology 80: 189-245), who proposed dividing Fusarium into seven genera, including the FSSC as the genus Neocosmospora, with subsequent justification based on claims that the Geiser et al. (2013) concept of Fusarium is polyphyletic (Sandoval-Denis et al. 2018; Persoonia 41:109-129). Here we test this claim, and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species recently described as Neocosmospora were recombined in Fusarium, and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium, as it remains the best scientific, nomenclatural and practical taxonomic option available.}
}
Taxa for tree 129525 of Study 27101

Citation title:
"Phylogenomic analysis of a 55.1 kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani species complex".

Study name:
"Phylogenomic analysis of a 55.1 kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani species complex".

This study is part of submission 27101
(Status: Published).
Taxa
Return to complete tree view
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
4409598 |
Beauveria bassiana |
176275
|
1221229
|
4409588 |
Fusarium albida 22152 |
|
|
4409631 |
Fusarium albosuccineum 20459 |
|
|
4409611 |
Fusarium ambrosium 62606 |
131363
|
1160576
|
4409595 |
Fusarium anguioides 25385 |
183586
|
3068649
|
4409608 |
Fusarium armeniacum 6227 |
679435
|
3356953
|
4409582 |
Fusarium asiaticum 26156 |
282267
|
5979098
|
4409655 |
Fusarium avenaceum 54939 |
40199
|
3917234
|
4409575 |
Fusarium aywerte 25410 |
427292
|
3356365
|
4409647 |
Fusarium babinda 25539 |
48486
|
3261592
|
4409616 |
Fusarium beomiforme 25174 |
44412
|
3037033
|
4409584 |
Fusarium buharicum 13371 |
44411
|
3193844
|
4409632 |
Fusarium buxicola 36148 |
57154
|
3102932
|
4409641 |
Fusarium chlamydosporum 13444 |
86545
|
3152207
|
4409646 |
Fusarium circinatum 25331 |
48490
|
3283678
|
4409605 |
Fusarium commune 28387 |
249398
|
4028510
|
4409603 |
Fusarium compactum 13829 |
|
|
4409578 |
Fusarium concolor 13459 |
48492
|
3152977
|
4409635 |
Fusarium continuum 66286 |
|
|
4409627 |
Fusarium culmorum 25475 |
5516
|
3100453
|
4409606 |
Fusarium cyanostoma 53998 |
|
|
4409624 |
Fusarium decemcellulare 13412 |
57161
|
3101561
|
4409614 |
Fusarium dimerum 20691 |
57145
|
3129925
|
4409581 |
Fusarium domesticum 29976 |
225610
|
|
4409659 |
Fusarium equiseti 66338 |
61235
|
3102771
|
4409586 |
Fusarium falciforme 43529 |
195108
|
3369614
|
4409585 |
Fusarium foetens 38302 |
246455
|
5975326
|
4409629 |
Fusarium fujikuroi 5538 |
171627
|
3193847
|
4409592 |
Fusarium gaditjirrii 45417 |
|
|
4409638 |
Fusarium graminearum 31084 |
254946
|
3103141
|
4409636 |
Fusarium graminum 20692 |
42747
|
3102845
|
4409654 |
Fusarium guttiforme 22945 |
47756
|
1432034
|
4409600 |
Fusarium hainanense 66475 |
|
|
4409580 |
Fusarium heterosporum 20693 |
42747
|
3100669
|
4409607 |
Fusarium hostae 29888 |
152502
|
3362951
|
4409630 |
Fusarium illudens 22090 |
131364
|
3193849
|
4409645 |
Fusarium irregulare 31160 |
|
|
4409651 |
Fusarium langsethiae 53436 |
179993
|
5967536
|
4409609 |
Fusarium lateritium 13622 |
5523
|
3124458
|
4409589 |
Fusarium longipes 13317 |
694270
|
3158212
|
4409621 |
Fusarium longipes 13368 |
694270
|
3158212
|
4409637 |
Fusarium lyarnte 54252 |
|
|
4409618 |
Fusarium mangiferae 25226 |
192010
|
1638922
|
4409622 |
Fusarium miscanthi 26231 |
75915
|
3296003
|
4409573 |
Fusarium nelsonii 13338 |
77846
|
3282689
|
4409643 |
Fusarium nematophilum 54600 |
|
|
4409591 |
Fusarium neocosmosporiellum 22166 |
|
|
4409610 |
Fusarium newnesense 66241 |
|
|
4409623 |
Fusarium niskadoi 25179 |
|
|
4409620 |
Fusarium nurragi 36452 |
457084
|
3356366
|
4409579 |
Fusarium oxysporum 32931 |
5507
|
1449647
|
4409656 |
Fusarium oxysporum 34936 |
5507
|
1449647
|
4409649 |
Fusarium penzigii 20711 |
587888
|
|
4409602 |
Fusarium poae 26941 |
36050
|
3034837
|
4409658 |
Fusarium praegraminearum 39664 |
|
|
4409576 |
Fusarium pseudograminearum 28062 |
101028
|
3294700
|
4409593 |
Fusarium redolens 22901 |
48865
|
3107125
|
4409650 |
Fusarium rusci 22134 |
|
|
4409617 |
Fusarium sacchari 66326 |
42676
|
1317892
|
4409628 |
Fusarium sambucinum 13708 |
5128
|
3070311
|
4409657 |
Fusarium sarcochroum 20472 |
|
3074869
|
4409648 |
Fusarium scirpi 66328 |
61235
|
3083821
|
4409599 |
Fusarium setosum 36526 |
57148
|
3040167
|
4409596 |
Fusarium sp 25184 |
|
|
4409642 |
Fusarium sp 52700 |
|
|
4409601 |
Fusarium sp 62590 AF6 |
|
|
4409640 |
Fusarium sporotrichioides 3299 |
5514
|
3056784
|
4409612 |
Fusarium staphyleae 22316 |
57149
|
3023855
|
4409615 |
Fusarium stilbioides 20429 |
|
|
4409660 |
Fusarium subglutinans 66333 |
42677
|
1147586
|
4409594 |
Fusarium sublunatum 13384 |
86547
|
3164409
|
4409577 |
Fusarium thapsinum 22049 |
120644
|
3279736
|
4409634 |
Fusarium torreyae 54149 |
|
|
4409625 |
Fusarium torulosum 22747 |
33205
|
1449661
|
4409590 |
Fusarium transvaalense 31008 |
|
|
4409633 |
Fusarium tricinctum 25481 |
61284
|
3054568
|
4409604 |
Fusarium vanettenii 45880 |
|
|
4409661 |
Fusarium venenatum 66329 |
56646
|
3261593
|
4409613 |
Fusarium ventricosum 25729 |
42327
|
3124248
|
4409626 |
Fusarium verrucosum 22566 |
|
|
4409587 |
Fusarium verticillioides 20956 |
117187
|
3193856
|
4409639 |
Fusarium virguliforme 31041 |
232082
|
4028526
|
4409574 |
Fusarium xylarioides 25486 |
221167
|
3169739
|
4409653 |
Fusarium zanthoxyli 66285 |
|
|
4409583 |
Fusarium zealandicum 22465 |
|
3356538
|
4409597 |
Neonectria coccinea 20487 |
57153
|
3294525
|
4409652 |
Neonectria ditissima 20485 |
78410
|
10155081
|
4409644 |
Neonectria sp 22505 |
|
|
4409619 |
Trichoderma brevicompactum |
247546
|
5975446
|