@ARTICLE{TreeBASE2Ref15374,
author = {Torsten Eriksson and M. S. Hibbs and Anne D Yoder and Charles F. Delwiche and Michael J Donoghue},
title = {The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.},
year = {2003},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {International Journal of Plant Sciences},
volume = {164},
number = {2},
pages = {},
abstract = {The phylogeny of Rosoideae was investigated using 44 species. Here we report new sequence data from the chloroplast trnL?trnF region as well as an increased sample of species. The analysis of these new data, along with previously used data from the nuclear ribosomal internal transcribed spacers (ITS), significantly increased resolution as well as confidence for Rosoideae phylogeny. Analyses were conducted using both Bayesian inference and parsimony methods on the data sets separately and in combination. The resulting phylogenies are congruent with all well supported clades of Rosoideae found in previous analyses of ITS or rbcL data. The support for these and other clades is improved and we consider several clades supported well enough to be named. The following clades are given phylogenetic definitions: Sanguisorbeae and its subclades Agrimoniinae and Sanguisorbinae, Potentilleae and its subclades Fragariinae and Potentilla, Roperculina (Rosa + Sanguisorbeae + Potentilleae), and Sanpotina (Sanguisorbeae + Potentilleae). Potentilla includes the P. anserina clade (Argentina) in our trnL/F and combined analyses, but this relationship is not resolved by ITS alone. The previously used genera Duchesnea (P. indica), Horkelia, and Ivesia are strongly supported as nested within Potentilla. Comarum (P. palustris and P. salesowianum), Sibbaldiopsis (P. tridentata), Dasiphora (P. fruticosa), and Drymocallis (P. arguta) join Alchemilla, Aphanes, Sibbaldia, Chamaerhodos, and Fragaria in the well supported Fragariinae clade outside of Potentilla. The monophyly of both Potentilleae and Sanguisorbeae is well supported, and the clades correspond to previously named tribes with the exception of Alchemilla and its segregate Aphanes which are nested within Potentilleae instead of in Sanguisorbeae. The position of Rubus is still not securely resolved.}
}
Taxa for tree 128752 of Study 982

Citation title:
"The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.".

This study was previously identified under the legacy study ID S868
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
4361399 |
Coniochaeta africana NR_137725_CBS_120868 |
|
|
4361391 |
Coniochaeta canina NR_120211_UTHSC_11_2460 |
|
|
4361403 |
Coniochaeta cateniformis NR_111517_UTHSC_01_1644 |
|
|
4361410 |
Coniochaeta decumbens NR_144912_CBS_153.42 |
|
|
4361396 |
Coniochaeta fasciculata HE610336_CBS_205.38 |
|
|
4361402 |
Coniochaeta gigantospora NR_121521_ILLS_60816 |
|
|
4361407 |
Coniochaeta hoffmannii NR_111518_CBS_245.38 |
|
|
4361397 |
Coniochaeta ligniaria AY198390_C8 |
177197
|
3036000
|
4361395 |
Coniochaeta ligniaria FN394684_3836 |
177197
|
3036000
|
4361405 |
Coniochaeta ligniaria KX394783_Fan_Guo_1302309 |
177197
|
3036000
|
4361389 |
Coniochaeta lignicola NR_111520_CBS_267.33 |
108017
|
1279788
|
4361406 |
Coniochaeta luteorubra HE610330_UTHSC_01_20_1 |
|
|
4361388 |
Coniochaeta luteoviridis AB190401_IFM_50534 |
177206
|
4022440
|
4361387 |
Coniochaeta luteoviridis DQ404354_64 |
177206
|
4022440
|
4361411 |
Coniochaeta mutabilis NR_111519_CBS_157.44 |
|
|
4361394 |
Coniochaeta polymorpha NR_121473_CBS_132722 |
|
|
4361404 |
Coniochaeta prunicola NR_137037_CBS_120875 |
|
|
4361408 |
Coniochaeta savoryi GQ922522_CBS_415.73 |
309462
|
5981710
|
4361393 |
Coniochaeta savoryi KU325432_P8_E7_68 |
309462
|
5981710
|
4361390 |
Coniochaeta sp. CSN654 ITS4 CS022 |
|
|
4361386 |
Coniochaeta velutina GPMM2016_ITS1 |
177201
|
3177364
|
4361401 |
Coniochaeta velutina GPMM2036_ITS1 |
177201
|
3177364
|
4361392 |
Coniochaeta velutina GQ154542_CBS_120874 |
177201
|
3177364
|
4361400 |
Coniochaeta velutina GQ154544_CBS_121444 |
177201
|
3177364
|
4361398 |
Myrmecridium flexuosum NR_146238_CBS_398.76 |
470090
|
|
4361412 |
Phialophora cyclaminis NR_145368_CBS_166.42 |
|
3172243
|
4361409 |
Rhodoveronaea varioseptata NR_136990_CBS_431.88 |
470104
|
|