@ARTICLE{TreeBASE2Ref15374,
author = {Torsten Eriksson and M. S. Hibbs and Anne D Yoder and Charles F. Delwiche and Michael J Donoghue},
title = {The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.},
year = {2003},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {International Journal of Plant Sciences},
volume = {164},
number = {2},
pages = {},
abstract = {The phylogeny of Rosoideae was investigated using 44 species. Here we report new sequence data from the chloroplast trnL?trnF region as well as an increased sample of species. The analysis of these new data, along with previously used data from the nuclear ribosomal internal transcribed spacers (ITS), significantly increased resolution as well as confidence for Rosoideae phylogeny. Analyses were conducted using both Bayesian inference and parsimony methods on the data sets separately and in combination. The resulting phylogenies are congruent with all well supported clades of Rosoideae found in previous analyses of ITS or rbcL data. The support for these and other clades is improved and we consider several clades supported well enough to be named. The following clades are given phylogenetic definitions: Sanguisorbeae and its subclades Agrimoniinae and Sanguisorbinae, Potentilleae and its subclades Fragariinae and Potentilla, Roperculina (Rosa + Sanguisorbeae + Potentilleae), and Sanpotina (Sanguisorbeae + Potentilleae). Potentilla includes the P. anserina clade (Argentina) in our trnL/F and combined analyses, but this relationship is not resolved by ITS alone. The previously used genera Duchesnea (P. indica), Horkelia, and Ivesia are strongly supported as nested within Potentilla. Comarum (P. palustris and P. salesowianum), Sibbaldiopsis (P. tridentata), Dasiphora (P. fruticosa), and Drymocallis (P. arguta) join Alchemilla, Aphanes, Sibbaldia, Chamaerhodos, and Fragaria in the well supported Fragariinae clade outside of Potentilla. The monophyly of both Potentilleae and Sanguisorbeae is well supported, and the clades correspond to previously named tribes with the exception of Alchemilla and its segregate Aphanes which are nested within Potentilleae instead of in Sanguisorbeae. The position of Rubus is still not securely resolved.}
}
Taxa for tree 128771 of Study 982

Citation title:
"The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.".

This study was previously identified under the legacy study ID S868
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
4363340 |
Calosphaeria africana CSN33_ITS5 |
509730
|
|
4363341 |
Calosphaeria africana NR_135945_STE_U_6182 |
509730
|
|
4363333 |
Calosphaeria pulchella NR_145357_CBS_115999 |
312312
|
3162026
|
4363335 |
Jattaea algeriensis NR_135946_STE_U_6201 |
|
3115446
|
4363325 |
Jattaea aphanospora NR_136007_J.F._06100 |
|
|
4363350 |
Jattaea aurea KT716462_CBS_140209 |
|
|
4363349 |
Jattaea discreta NR_145369_CBS_127681 |
|
|
4363336 |
Jattaea leucospermi NR_135948_CBS_119343 |
531893
|
|
4363338 |
Jattaea mookgoponga EU367449_STE_U_6184 |
509728
|
|
4363329 |
Jattaea mookgoponga NR_136008_CBS_120867 |
509728
|
|
4363331 |
Jattaea ribicola NR_136135_CBS_139779 |
|
|
4363345 |
Jattaea sp. CSN1152 ITS4 CS30 |
|
|
4363334 |
Jattaea taediosa NR_136136_MR_3669 |
|
|
4363348 |
Jattaea tumidula NR_136137_CBS_140208 |
|
|
4363326 |
Pleurostoma ochraceum NR_136033_CBS_131321 |
|
|
4363327 |
Pleurostoma ootheca NR_136009_CBS_115329 |
308474
|
1138750
|
4363343 |
Pleurostoma repens NR_135925_CBS_294.39 |
|
|
4363344 |
Pleurostoma richardsiae CSN1101_ITS4_CS022 |
|
|
4363328 |
Pleurostoma richardsiae CSN1161_ITS5 |
|
|
4363332 |
Pleurostoma richardsiae CSN144_ITS5 |
|
|
4363337 |
Pleurostoma richardsiae CSN145_ITS4_CS30 |
|
|
4363322 |
Pleurostoma richardsiae CSN1925_ITS5_CS31 |
|
|
4363347 |
Pleurostoma richardsiae CSN493_ITS5 |
|
|
4363339 |
Pleurostoma richardsiae CSN496_ITS4_CS30 |
|
|
4363323 |
Pleurostoma richardsiae CSN500_ITS5 |
|
|
4363324 |
Pleurostoma richardsiae CSN501_ITS4_CS012 |
|
|
4363330 |
Pleurostoma richardsiae CSN514_ITS5_CS31 |
|
|
4363346 |
Pleurostoma richardsiae CSN947_ITS4_CS30 |
|
|
4363351 |
Pleurostoma richardsiae NR_135933_CBS_270.33 |
|
|
4363342 |
Togniniella acerosa NR_135947_CBS_113726 |
312314
|
5982057
|