@ARTICLE{TreeBASE2Ref15374,
author = {Torsten Eriksson and M. S. Hibbs and Anne D Yoder and Charles F. Delwiche and Michael J Donoghue},
title = {The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.},
year = {2003},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {International Journal of Plant Sciences},
volume = {164},
number = {2},
pages = {},
abstract = {The phylogeny of Rosoideae was investigated using 44 species. Here we report new sequence data from the chloroplast trnL?trnF region as well as an increased sample of species. The analysis of these new data, along with previously used data from the nuclear ribosomal internal transcribed spacers (ITS), significantly increased resolution as well as confidence for Rosoideae phylogeny. Analyses were conducted using both Bayesian inference and parsimony methods on the data sets separately and in combination. The resulting phylogenies are congruent with all well supported clades of Rosoideae found in previous analyses of ITS or rbcL data. The support for these and other clades is improved and we consider several clades supported well enough to be named. The following clades are given phylogenetic definitions: Sanguisorbeae and its subclades Agrimoniinae and Sanguisorbinae, Potentilleae and its subclades Fragariinae and Potentilla, Roperculina (Rosa + Sanguisorbeae + Potentilleae), and Sanpotina (Sanguisorbeae + Potentilleae). Potentilla includes the P. anserina clade (Argentina) in our trnL/F and combined analyses, but this relationship is not resolved by ITS alone. The previously used genera Duchesnea (P. indica), Horkelia, and Ivesia are strongly supported as nested within Potentilla. Comarum (P. palustris and P. salesowianum), Sibbaldiopsis (P. tridentata), Dasiphora (P. fruticosa), and Drymocallis (P. arguta) join Alchemilla, Aphanes, Sibbaldia, Chamaerhodos, and Fragaria in the well supported Fragariinae clade outside of Potentilla. The monophyly of both Potentilleae and Sanguisorbeae is well supported, and the clades correspond to previously named tribes with the exception of Alchemilla and its segregate Aphanes which are nested within Potentilleae instead of in Sanguisorbeae. The position of Rubus is still not securely resolved.}
}
Taxa for tree 128780 of Study 982

Citation title:
"The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.".

This study was previously identified under the legacy study ID S868
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
4363656 |
Aequabiliella effusa CBS_120883 |
|
|
4363607 |
Aequabiliella palatina JKI_Ap36 |
|
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4363759 |
Celerioriella dura CBS_120882 |
|
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4363686 |
Celerioriella petrophiles CPC_29256 |
|
|
4363712 |
Celerioriella prunicola CBS_120876 |
|
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4363844 |
Celerioriella sp. CSN801 |
|
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4363851 |
Celerioriella umnqumae CSN1091 |
|
|
4363853 |
Celothelium cinchonarum F_17105_f |
364718
|
1377406
|
4363769 |
Dolabra nepheliae CBS_123297 |
0
|
3208132
|
4363860 |
Minutiella pruni avium_CBS_145513 |
|
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4363760 |
Minutiella simplex JKI_Jn27 |
|
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4363696 |
Minutiella tardicola CBS_121757 |
|
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4363734 |
Moristroma germanicum JKI_Feb06 |
|
|
4363762 |
Moristroma japonicum BN1674 |
236306
|
5974063
|
4363861 |
Moristroma palatinum JKI_Au02 |
|
|
4363704 |
Moristroma quercinum BN1678 |
236305
|
5993053
|
4363623 |
Neophaeomoniella constricta JKI_Mz35 |
|
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4363854 |
Neophaeomoniella corymbiae CBS_145092 |
|
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4363862 |
Neophaeomoniella eucalypti CPC_25161 |
|
|
4363845 |
Neophaeomoniella eucalyptigena CBS_145093 |
|
|
4363605 |
Neophaeomoniella niveniae CBS_131316 |
|
|
4363685 |
Neophaeomoniella ossiformis JKI_May03 |
|
|
4363672 |
Neophaeomoniella zymoides CBS_114904 |
|
|
4363847 |
Neophaeomoniella zymoides CBS_121168 |
|
|
4363850 |
Paraphaeoisaria alabamensis CBS_101.77A |
|
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4363644 |
Paraphaeomoniella capensis CBS_123535 |
|
|
4363720 |
Phaeomoniella chlamydospora CBS_229.95 |
65419
|
1408795
|
4363848 |
Phaeomoniella chlamydospora STEU7536 |
65419
|
1408795
|
4363748 |
Phaeomoniella pinifoliorum CBS_114903 |
|
|
4363618 |
Pseudophaeomoniella oleae CBS_139191 |
|
|
4363624 |
Pseudophaeomoniella oleicola CBS_139192 |
|
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4363846 |
Pseuodphaeomoniella globosa CSN185 |
|
|
4363676 |
Rhynchostoma proteae CBS_112051 |
225611
|
4027821
|
4363599 |
Strelitziana cliviae CPC_19822 |
|
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4363613 |
Strelitziana malaysiana CPC_24874 |
|
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4363852 |
Vredendaliella oleae PMM1193 |
|
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4363688 |
Xenocylindrosporium kirstenboschense CBS_125545 |
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4363857 |
Xenocylindrosporium margaritas CSN1179 |
|
|
4363858 |
Xenocylindrosporium sp. CFJS 2015c CSN1184 |
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4363856 |
Xenocylindrosporium sp. CFJS 2015e CSN1222 |
|
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4363859 |
Xenocylindrosporium sp. CSN1174 28S |
|
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4363855 |
Xenocylindrosporium sp. CSN1180 |
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4363849 |
Xenocylindrosporium sp. CSN1191 28S |
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|