@ARTICLE{TreeBASE2Ref15374,
author = {Torsten Eriksson and M. S. Hibbs and Anne D Yoder and Charles F. Delwiche and Michael J Donoghue},
title = {The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.},
year = {2003},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {International Journal of Plant Sciences},
volume = {164},
number = {2},
pages = {},
abstract = {The phylogeny of Rosoideae was investigated using 44 species. Here we report new sequence data from the chloroplast trnL?trnF region as well as an increased sample of species. The analysis of these new data, along with previously used data from the nuclear ribosomal internal transcribed spacers (ITS), significantly increased resolution as well as confidence for Rosoideae phylogeny. Analyses were conducted using both Bayesian inference and parsimony methods on the data sets separately and in combination. The resulting phylogenies are congruent with all well supported clades of Rosoideae found in previous analyses of ITS or rbcL data. The support for these and other clades is improved and we consider several clades supported well enough to be named. The following clades are given phylogenetic definitions: Sanguisorbeae and its subclades Agrimoniinae and Sanguisorbinae, Potentilleae and its subclades Fragariinae and Potentilla, Roperculina (Rosa + Sanguisorbeae + Potentilleae), and Sanpotina (Sanguisorbeae + Potentilleae). Potentilla includes the P. anserina clade (Argentina) in our trnL/F and combined analyses, but this relationship is not resolved by ITS alone. The previously used genera Duchesnea (P. indica), Horkelia, and Ivesia are strongly supported as nested within Potentilla. Comarum (P. palustris and P. salesowianum), Sibbaldiopsis (P. tridentata), Dasiphora (P. fruticosa), and Drymocallis (P. arguta) join Alchemilla, Aphanes, Sibbaldia, Chamaerhodos, and Fragaria in the well supported Fragariinae clade outside of Potentilla. The monophyly of both Potentilleae and Sanguisorbeae is well supported, and the clades correspond to previously named tribes with the exception of Alchemilla and its segregate Aphanes which are nested within Potentilleae instead of in Sanguisorbeae. The position of Rubus is still not securely resolved.}
}
Taxa for tree 128791 of Study 982

Citation title:
"The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.".

This study was previously identified under the legacy study ID S868
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
4364905 |
Diaporthe ambigua CBS_114015 |
73123
|
1216406
|
4364852 |
Diaporthe ampelina CBS_111888 |
|
|
4364301 |
Diaporthe amygdali CBS_126679 |
83182
|
1156156
|
4364892 |
Diaporthe aspalathi CBS_117169 |
626713
|
|
4364238 |
Diaporthe baccae CBS_136972 |
|
|
4364183 |
Diaporthe chamaeropis CBS_454.81 |
|
|
4364470 |
Diaporthe cinerascens CBS_719.96 |
|
3917811
|
4364576 |
Diaporthe citrichinensis ZJUD34 |
|
|
4364586 |
Diaporthe cytosporella AR5148 |
|
|
4364785 |
Diaporthe dorycnii MFLUCC_17_1015 |
|
|
4364810 |
Diaporthe eres AR5193 |
83184
|
1197496
|
4364529 |
Diaporthe foeniculina CBS 111553 |
|
|
4364658 |
Diaporthe goulteri BRIP_55657a |
|
|
4364696 |
Diaporthe helianthi CBS_592.81 |
158607
|
1144013
|
4364196 |
Diaporthe hubeiensis JZB320123 |
|
|
4364770 |
Diaporthe inconspicua CBS_133813 |
|
|
4364682 |
Diaporthe leucospermi CBS111980 |
|
|
4364891 |
Diaporthe lithocarpus CGMCC_3.15175 |
|
|
4364371 |
Diaporthe longispora CBS_194.36 |
|
|
4364442 |
Diaporthe manihotia CBS_505.76 |
|
3034727
|
4364219 |
Diaporthe mayteni CBS_133185 |
|
|
4364872 |
Diaporthe multigutullata ZJUD98 |
|
|
4364915 |
Diaporthe nebulae PMM1681 |
|
|
4364632 |
Diaporthe novem CBS_127271 |
|
|
4364491 |
Diaporthe oncostoma CBS_589.78 |
187230
|
1186927
|
4364492 |
Diaporthe perjuncta CBS_109745 |
186170
|
1191715
|
4364677 |
Diaporthe perniciosa CBS_124030 |
83183
|
3919215
|
4364103 |
Diaporthe ravennica MFLUCC_15_0479 |
|
|
4364261 |
Diaporthe rudis CBS_113201 |
|
3052478
|
4364139 |
Diaporthe sclerotioides CBS_296.67 |
193001
|
1152848
|
4364782 |
Diaporthe sennae CFCC_51636 |
|
|
4364493 |
Diaporthe sojae CBS_659.78 |
|
3163792
|
4364859 |
Diaporthe sp. CSN223 ITSds |
|
|
4364580 |
Diaporthe sp. CSN224 ITSds |
|
|
4364914 |
Diaporthe sp. CSN225 ITSds |
|
|
4364150 |
Diaporthe sp. CSN296 ITS 1 |
|
|
4364180 |
Diaporthe sp. CSN297 ITS 1 |
|
|
4364858 |
Diaporthe sp. CSN301 ITSds |
|
|
4364674 |
Diaporthe sp. CSN306 ITSds |
|
|
4364177 |
Diaporthe sp. CSN307 ITS1 |
|
|
4364109 |
Diaporthe sp. CSN321 ITSds |
|
|
4364909 |
Diaporthe sp. CSN343 ITS1 |
|
|
4364394 |
Diaporthe sp. CSN348 ITS1 |
|
|
4364267 |
Diaporthe sp. CSN549 ITSds |
|
|
4364427 |
Diaporthe sp. CSN550 ITSds |
|
|
4364110 |
Diaporthe sp. CSN866 ITS1 |
|
|
4364117 |
Diaporthe sp. CSN867 ITS 1 |
|
|
4364568 |
Diaporthe sp. ITS5 CS29 CSN227 HT2 |
|
|
4364382 |
Diaporthe sp. PMM2076 ITS1 |
|
|
4364159 |
Diaporthe sp. PMM2078 ITS1 |
|
|
4364838 |
Diaporthe sp. PMM2079 ITS1 |
|
|
4364479 |
Diaporthe sp. PMM2080 ITS1 |
|
|
4364887 |
Diaporthe sp. PMM2081 ITS1 |
|
|
4364221 |
Diaporthe sp. PMM2083 ITS1 |
|
|
4364633 |
Diaporthe sp. PMM2161 ITS5 |
|
|
4364271 |
Diaporthe stictica CBS_370.54 |
|
|
4364421 |
Diaporthe tectonae MFLUCC_12_0777 |
|
|
4364456 |
Diaporthe toxica CBS_534.93 |
|
3235829
|
4364767 |
Diaporthe tulliensis BRIP_62248a |
|
|
4364699 |
Diaporthe ueckerae FAU656 |
|
|
4364233 |
Diaporthe vaccinii CBS_160.32 |
105482
|
1288824
|
4364896 |
Diaporthe viniferae JZB320079 |
|
|
4364801 |
Diaporthe virgiliae CWM_40755 |
|
|
4364561 |
Diaporthella corylina CBS_121124 |
|
|
4364630 |
Phomopsis sp. CH 01 |
|
|
4364567 |
Phomopsis sp. CH 03 |
|
|