@ARTICLE{TreeBASE2Ref15374,
author = {Torsten Eriksson and M. S. Hibbs and Anne D Yoder and Charles F. Delwiche and Michael J Donoghue},
title = {The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.},
year = {2003},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {International Journal of Plant Sciences},
volume = {164},
number = {2},
pages = {},
abstract = {The phylogeny of Rosoideae was investigated using 44 species. Here we report new sequence data from the chloroplast trnL?trnF region as well as an increased sample of species. The analysis of these new data, along with previously used data from the nuclear ribosomal internal transcribed spacers (ITS), significantly increased resolution as well as confidence for Rosoideae phylogeny. Analyses were conducted using both Bayesian inference and parsimony methods on the data sets separately and in combination. The resulting phylogenies are congruent with all well supported clades of Rosoideae found in previous analyses of ITS or rbcL data. The support for these and other clades is improved and we consider several clades supported well enough to be named. The following clades are given phylogenetic definitions: Sanguisorbeae and its subclades Agrimoniinae and Sanguisorbinae, Potentilleae and its subclades Fragariinae and Potentilla, Roperculina (Rosa + Sanguisorbeae + Potentilleae), and Sanpotina (Sanguisorbeae + Potentilleae). Potentilla includes the P. anserina clade (Argentina) in our trnL/F and combined analyses, but this relationship is not resolved by ITS alone. The previously used genera Duchesnea (P. indica), Horkelia, and Ivesia are strongly supported as nested within Potentilla. Comarum (P. palustris and P. salesowianum), Sibbaldiopsis (P. tridentata), Dasiphora (P. fruticosa), and Drymocallis (P. arguta) join Alchemilla, Aphanes, Sibbaldia, Chamaerhodos, and Fragaria in the well supported Fragariinae clade outside of Potentilla. The monophyly of both Potentilleae and Sanguisorbeae is well supported, and the clades correspond to previously named tribes with the exception of Alchemilla and its segregate Aphanes which are nested within Potentilleae instead of in Sanguisorbeae. The position of Rubus is still not securely resolved.}
}
Taxa for tree 128792 of Study 982

Citation title:
"The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.".

This study was previously identified under the legacy study ID S868
(Status: Published).
Taxa
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ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
4364863 |
Diplodia africana CAD014 |
448126
|
|
4364208 |
Diplodia africana CBS_120835 |
448126
|
|
4364431 |
Diplodia africana STE_U_5908_T |
448126
|
|
4364895 |
Diplodia agrifolia UCR1429 |
|
|
4364703 |
Diplodia agrifolia UCR732_T |
|
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4364786 |
Diplodia alatafructa CMW22627_T |
|
|
4364579 |
Diplodia alatafructa CMW22635 |
|
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4364807 |
Diplodia alatafructa CMW22721 |
|
|
4364507 |
Diplodia allocellula CMW_36468_T |
|
|
4364619 |
Diplodia allocellula CMW_36469 |
|
|
4364243 |
Diplodia bulgarica CBS_124135 |
|
|
4364273 |
Diplodia bulgarica CBS_124254_T |
|
|
4364648 |
Diplodia citricarpa IRAN1578C_T |
|
|
4364459 |
Diplodia corticola CBS_112077 |
548935
|
9730067
|
4364379 |
Diplodia corticola CBS_112549_T |
548935
|
9730067
|
4364335 |
Diplodia crataegicola MFLU_15_1311_T |
|
|
4364608 |
Diplodia cupressi CBS_168.87_T |
400389
|
10320557
|
4364795 |
Diplodia cupressi CBS_261.85 |
400389
|
10320557
|
4364535 |
Diplodia eriobotryicola BN_21_T |
|
|
4364264 |
Diplodia estuarina CMW41230 |
|
|
4364613 |
Diplodia estuarina CMW41231_T |
|
|
4364514 |
Diplodia galiicola T |
|
|
4364216 |
Diplodia gallae CBS_211.25 |
|
|
4364451 |
Diplodia insularis BL99 |
|
|
4364543 |
Diplodia insularis CBS_140350_T |
|
|
4364916 |
Diplodia intermedia CBS_112556 |
|
|
4364101 |
Diplodia intermedia CBS_124462_T |
|
|
4364114 |
Diplodia malorum BN_35 |
|
3141509
|
4364669 |
Diplodia malorum CBS_124130_T |
|
3141509
|
4364582 |
Diplodia mutila CBS_112553 |
85927
|
1594287
|
4364363 |
Diplodia mutila CBS_136014_T |
85927
|
1594287
|
4364289 |
Diplodia mutila CBS_136016 |
85927
|
1594287
|
4364697 |
Diplodia mutila PD75 |
85927
|
1594287
|
4364777 |
Diplodia neojuniperi B0031_T |
|
|
4364466 |
Diplodia neojuniperi B0032 |
|
|
4364410 |
Diplodia olivarum CAD019 |
512795
|
|
4364590 |
Diplodia olivarum CBS_121886 |
512795
|
|
4364805 |
Diplodia olivarum CBS_121887_T |
512795
|
|
4364827 |
Diplodia pseudoseriata BL133 |
|
|
4364293 |
Diplodia pseudoseriata UY107 |
|
|
4364719 |
Diplodia pseudoseriata UY788_T |
|
|
4364467 |
Diplodia pyri CBS_121862_T |
|
|
4364464 |
Diplodia quercivora BL8_T |
|
|
4364711 |
Diplodia quercivora BL9 |
|
|
4364742 |
Diplodia rosacearum |
|
|
4364357 |
Diplodia rosacearum T |
|
|
4364118 |
Diplodia rosulata CBS_116470_T |
345083
|
5984752
|
4364310 |
Diplodia rosulata CBS_116472 |
345083
|
5984752
|
4364824 |
Diplodia sapinea CAP_166 |
|
3058347
|
4364667 |
Diplodia sapinea CBS_393.84_T |
|
3058347
|
4364647 |
Diplodia scrobiculata CBS_109944 |
280322
|
4037089
|
4364471 |
Diplodia scrobiculata CBS_118110 |
280322
|
4037089
|
4364581 |
Diplodia scrobiculata CMW189_T |
280322
|
4037089
|
4364574 |
Diplodia seriata 4K93 |
420778
|
3086572
|
4364532 |
Diplodia seriata BN_27 |
420778
|
3086572
|
4364129 |
Diplodia seriata BN_96 |
420778
|
3086572
|
4364735 |
Diplodia seriata CBS_110858 |
420778
|
3086572
|
4364504 |
Diplodia seriata CBS_112555_T |
420778
|
3086572
|
4364275 |
Diplodia seriata CBS_113503 |
420778
|
3086572
|
4364803 |
Diplodia sp. 1 CBS 139667 |
|
|
4364439 |
Diplodia sp. 2 CBS 533.87 |
|
|
4364729 |
Diplodia sp. 4 CBS 230.30 |
|
|
4364376 |
Diplodia sp. ID0683 |
|
|
4364342 |
Diplodia sp. PMM2093 ITS ds |
|
|
4364169 |
Diplodia subglobosa CBS_124133_T |
|
|
4364814 |
Diplodia subglobosa JL375 |
|
|
4364256 |
Diplodia tsugae CBS_418.64_T |
|
|
4364856 |
Lasiodiplodia theobromae CBS_111530 |
502207
|
3093322
|
4364341 |
Lasiodiplodia theobromae CBS_164.96 |
502207
|
3093322
|