@ARTICLE{TreeBASE2Ref15374,
author = {Torsten Eriksson and M. S. Hibbs and Anne D Yoder and Charles F. Delwiche and Michael J Donoghue},
title = {The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.},
year = {2003},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {International Journal of Plant Sciences},
volume = {164},
number = {2},
pages = {},
abstract = {The phylogeny of Rosoideae was investigated using 44 species. Here we report new sequence data from the chloroplast trnL?trnF region as well as an increased sample of species. The analysis of these new data, along with previously used data from the nuclear ribosomal internal transcribed spacers (ITS), significantly increased resolution as well as confidence for Rosoideae phylogeny. Analyses were conducted using both Bayesian inference and parsimony methods on the data sets separately and in combination. The resulting phylogenies are congruent with all well supported clades of Rosoideae found in previous analyses of ITS or rbcL data. The support for these and other clades is improved and we consider several clades supported well enough to be named. The following clades are given phylogenetic definitions: Sanguisorbeae and its subclades Agrimoniinae and Sanguisorbinae, Potentilleae and its subclades Fragariinae and Potentilla, Roperculina (Rosa + Sanguisorbeae + Potentilleae), and Sanpotina (Sanguisorbeae + Potentilleae). Potentilla includes the P. anserina clade (Argentina) in our trnL/F and combined analyses, but this relationship is not resolved by ITS alone. The previously used genera Duchesnea (P. indica), Horkelia, and Ivesia are strongly supported as nested within Potentilla. Comarum (P. palustris and P. salesowianum), Sibbaldiopsis (P. tridentata), Dasiphora (P. fruticosa), and Drymocallis (P. arguta) join Alchemilla, Aphanes, Sibbaldia, Chamaerhodos, and Fragaria in the well supported Fragariinae clade outside of Potentilla. The monophyly of both Potentilleae and Sanguisorbeae is well supported, and the clades correspond to previously named tribes with the exception of Alchemilla and its segregate Aphanes which are nested within Potentilleae instead of in Sanguisorbeae. The position of Rubus is still not securely resolved.}
}
Taxa for tree 128793 of Study 982

Citation title:
"The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of Chloroplast DNA.".

This study was previously identified under the legacy study ID S868
(Status: Published).
Taxa
Return to complete tree view
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
4364861 |
Cryptosphaeria ligniota KT425233_CBS273.87 |
140168
|
3092641
|
4364816 |
Cryptosphaeria multicontinentalis KT425237_NSW03PO |
|
|
4364844 |
Cryptosphaeria pullmanensis KT425235_ATCC_52655 |
140169
|
3023782
|
4364499 |
Cryptovalsa ampelina GQ293908_DMO100 |
245560
|
1449019
|
4364220 |
Cryptovalsa ampelina HQ692558_HVVIT04 |
245560
|
1449019
|
4364688 |
Cryptovalsa ampelina KY752771_STEU_5947 |
245560
|
1449019
|
4364640 |
Cryptovalsa ampelina KY752772_STEU_6087 |
245560
|
1449019
|
4364653 |
Cryptovalsa ampelina KY752773_STEU_7942 |
245560
|
1449019
|
4364098 |
Cryptovalsa rabenhorstii HQ692620_WA07CO |
|
|
4364793 |
Diatrypaceae sp. 2905 ITS 1 1.ab1 F02 |
|
|
4364497 |
Diatrypaceae sp. 3071 ITS 1 1.ab1 G07 |
|
|
4364794 |
Diatrypaceae sp. ITS4 CS025 ID318 |
|
|
4364356 |
Diatrypaceae sp. ITS4 CS30 CSN1924 |
|
|
4364166 |
Eutypa consobrina AJ302447_E38M |
140182
|
3046075
|
4364524 |
Eutypa cremea KY111656_STEU_8082 |
|
|
4364597 |
Eutypa cremea KY752761_STEU_7945 |
|
|
4364587 |
Eutypa cremea KY752762_STEU_5832 |
|
|
4364714 |
Eutypa cremea KY752763_STEU_6085 |
|
|
4364882 |
Eutypa cremea KY752764_STEU_8139 |
|
|
4364230 |
Eutypa cremea KY752765_STEU_8410 |
|
|
4364616 |
Eutypa crustata AJ302448_E39C |
140189
|
3918770
|
4364481 |
Eutypa laevata HM164737_CBS291.87 |
140190
|
2414899
|
4364760 |
Eutypa lata aceri HM164734_CBS217.87 |
|
|
4364644 |
Eutypa lata HM164730_EAMS100 |
97096
|
3052741
|
4364106 |
Eutypa lata HQ692616_SAPN01 |
97096
|
3052741
|
4364704 |
Eutypa lata KY752766_STEU_6082 |
97096
|
3052741
|
4364908 |
Eutypa lata KY752767_STEU_6083 |
97096
|
3052741
|
4364229 |
Eutypa lata KY752768_STEU_6081 |
97096
|
3052741
|
4364556 |
Eutypa lata KY752769_STEU_6084 |
97096
|
3052741
|
4364500 |
Eutypa lata KY752770_STEU_8411 |
97096
|
3052741
|
4364899 |
Eutypa lejoplaca AY684221_020202_5 |
289310
|
5979730
|
4364554 |
Eutypa leptoplaca AY684225_CBS_286.87 |
140184
|
3046076
|
4364361 |
Eutypa leptoplaca AY684226_CBS_287.87 |
140184
|
3046076
|
4364217 |
Eutypa leptoplaca AY684227_CBS_288.87 |
140184
|
3046076
|
4364366 |
Eutypa petrakii petrakii HM164735_CBS244.87 |
|
|
4364234 |
Eutypa sparsa AY684219_3802_3a |
289311
|
3121595
|
4364879 |
Eutypa tetragona DQ006923_CBS_284.87 |
289312
|
3918302
|
4364295 |
Eutypella australiensis HM581945_CNP03 |
|
|
4364676 |
Eutypella citricola HQ692579_HVVIT07 |
|
3126723
|
4364845 |
Eutypella citricola HQ692581_HVOT01 |
|
3126723
|
4364134 |
Eutypella citricola HQ692589_HVGRF01 |
|
3126723
|
4364370 |
Eutypella citricola KY752777_STEU_7944 |
|
3126723
|
4364592 |
Eutypella citricola KY752778_STEU_5948 |
|
3126723
|
4364646 |
Eutypella citricola KY752779_STEU_7943 |
|
3126723
|
4364403 |
Eutypella citricola KY752780_STEU_8412 |
|
3126723
|
4364395 |
Eutypella citricola KY752781_STEU_8249 |
|
3126723
|
4364901 |
Eutypella microtheca HQ692560_ADEL300 |
|
|
4364624 |
Eutypella microtheca HQ692566_T2R2S7 |
|
|
4364186 |
Eutypella microtheca HQ692569_HVGRF02 |
|
|
4364417 |
Eutypella microtheca KY752774_STEU_6086 |
|
|
4364670 |
Eutypella microtheca KY752775_STEU_7941 |
|
|
4364437 |
Eutypella microtheca KY752776_STEU_5949 |
|
|
4364381 |
Eutypella vitis AJ302466_EL57A |
140563
|
3038164
|
4364185 |
Eutypella vitis DQ006943_MSUELM13 |
140563
|
3038164
|